Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCGTATTCTGATATGATTCTTGCGGAGGGTATCTCGGTTCTGTGTAATGATCTTGAGgtattttatatcattgcataatgctttaagaatgatgtggttttatcttccattaataacaactgtcttgaatttttcttcag

Basic information

species Arabidopsis thaliana
transcript AT3G12760.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124732747|gb|EH824149.1|EH824149
EST:     TGATTCTTGCGGAGGGTATCTCGGTTCTGTGTAATGATCTTGAG                         GTGGAACCGCAAGACATAGTCACG
genomic: TGATTCTTGCGGAGGGTATCTCGGTTCTGTGTAATGATCTTGAGgtattttata ... ttttcttcagGTGGAACCGCAAGACATAGTCACG
EST: gi|164040954|gb|ES182512.1|ES182512
EST:     CTGATATGATTCTTGCGGAGGGTATCTCGGTTCTGTGTAATGATCTTGAG                         GTGGAACCGCAAGACATAGTCACG
genomic: CTGATATGATTCTTGCGGAGGGTATCTCGGTTCTGTGTAATGATCTTGAGgtattttata ... ttttcttcagGTGGAACCGCAAGACATAGTCACG