1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgttcaatatcaaacttttcctacaactttgtccatgtgttcttgctttcgtcttgggctaccaaactacatatgctgagttaaactcgttggttttcttgctcatcttctttcagTTGGTTCTTTCGTGGCATATGAATGCTGCAACAGCGTGTGAGTTTTCCAGGCAAGAATTTATCAGTGGATTACAGGCATTAGG
species | Arabidopsis thaliana |
transcript | AT3G12760.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTGGAACCGCAAGACATAGTCACG TTAGGTTCTTTCGTGGCATATGAATGCEST: gi|124965137|gb|EL039347.1|EL039347
genomic: GGTGGAACCGCAAGACATAGTCACGgtatgttcaa ... cttctttcagTT-GGTTCTTTCGTGGCATATGAATGC
EST: GACATAGTCACG TTGGTTCTTTCGTGGCATATGAATGCTGCAACAGCGTGTEST: gi|86078707|gb|DR374464.1|DR374464
genomic: GACATAGTCACGgtatgttcaa ... cttctttcagTTGGTTCTTTCGTGGCATATGAATGCTGCAACAGCGTGT
EST: CGCAAGACATAGTCACG TTGGTTCTTTCGTGGCATATGAATGCTGCAACAGCGTGTGAGTTTTCCAGGEST: gi|164040954|gb|ES182512.1|ES182512
genomic: CGCAAGACATAGTCACGgtatgttcaa ... cttctttcagTTGGTTCTTTCGTGGCATATGAATGCTGCAACAGCGTGTGAGTTTTCCAGG
EST: GGTGGAACCGCAAGACATAGTCACG TTGGTTCTTTCGTGGCA
genomic: GGTGGAACCGCAAGACATAGTCACGgtatgttcaa ... cttctttcagTTGGTTCTTTCGTGGCA
ccaaactacatatgctgagttaaactcgttggttttcttgctcatcttctttcagTTGGTTCTTTCGTGGCATATGAATGCTGCAACAGCGTGTGAGTTTTCCAGGCAAGAATTTATCAGTGGATTACAGGCATTAGG
ttttcttgctcatctt CT-rich tract
tacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcaatatcaaacttttcctacaactttgtccatgtgttcttgctttcgtcttgggctaccaaactacatatgctgagttaaactcgttggttttcttgctcatcttctttcagTTGGTTCTTTCGTGGCATATGAATGCTGCAACAGCGTGTGAGTTTTCCAGGCAAGAATTTATCAGTGGATTACAGGCATTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA