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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagaaaaactagatacagttgtgctattgagcttacattgattgcaactatgggcttagcgttgatatatggattgagacaatattttgtgatgcagATGGTCGACCCAGTGCTGTCGAATTACGATGCAGAAGGAGCATGGCCTTACCTGATTGATGAATTCGTTGAGTATTTGTATGACAAAAATGTCGTTGAGA

Basic information

species Arabidopsis thaliana
transcript AT3G12760.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12760.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: EFJ18395 (Selaginella moellendorffii), 3'ss of exon 4
gtaaaagaaaaactagatacagttgtgctattgagcttacattgattgcaactatgggcttagcgttgatatatggattgagacaatattttgtgatgcagATGGTCGACCCAGTGCTGTCGAATTACGATGCAGAAGGAGCATGGCCTTACCTGATTGATGAATTCGTTGAGTATTTGTATGACAAAAATGTCGTTGAGA
                                             | | |  |  | | |||    |  | ||   ||      | | |||| |    ||||   |   |||    ||||| ||||||||||| ||||| |||||||| ||||| ||||| ||||| |  ||||||                         
--------------------------------------------gtggtacttgcgtgattaaaact--tctactaatgtctgaagtcttttat--ctcagAGTATTAGCCCGACACTGTCAAATTACGATGCGGAAGGCGCATGGCCATACCTTATTGACGAATTTGCCGAGTAT-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078707|gb|DR374464.1|DR374464
EST:     ACAAGGCCATATCTAAGGACACATGGGCACAGCTACTGGAATTTTCAAGG                         ATGGTCGACCCAGTGCTGTCGAATTACGATGCAGAAGGAGCATGGCCTTAC
genomic: ACAAGGCCATATCTAAGGACACATGGGCACAGCTACTGGAATTTTCAAGGgtaaaagaaa ... tgtgatgcagATGGTCGACCCAGTGCTGTCGAATTACGATGCAGAAGGAGCATGGCCTTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaactatgggcttagcgttgatatatggattgagacaatattttgtgatgcagATGGTCGACCCAGTGCTGTCGAATTACGATGCAGAAGGAGCATGGCCTTACCTGATTGATGAATTCGTTGAGTATTTGTATGACAAAAATGTCGTTGAGA
                 cgttgat  putative branch site (score: 5)
                                    acaatatttt  TA-rich tract