1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacgcgctttctccttctcctccttttgtttttttccctctgctttaggtttgcggatcctcttatggcgtctttgcttttctgattcttagagtttcattttaagtcgagtagaaaacgaacaaggctccttaattttgcgatttcagtgattgtcgacatctttgttaatcatatgattggttttgttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATCACAGGAGCTAG
species | Arabidopsis thaliana |
transcript | AT3G12760.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGGATTCTTCTTCACTATG CATAAGTTGAGCAGAAGCAACCGTGACAAAACTTCAGCAGTTCGTGGCTATEST: gi|125255787|gb|EL269872.1|EL269872
genomic: CTGGATTCTTCTTCACTATGgtacgcgctt ... ttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAA-CTTCAGCAGTTCGTGGCTAT
EST: CTTCTTCACTATG CATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATCEST: gi|124744958|gb|EH836120.1|EH836120
genomic: CTTCTTCACTATGgtacgcgctt ... ttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATC
EST: CTGGATTCTTCTTCACTATG CATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATCEST: gi|163986415|gb|ES195719.1|ES195719
genomic: CTGGATTCTTCTTCACTATGgtacgcgctt ... ttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATC
EST: TACCTTGTTAGGGTTTTGTATTT-GGCTTCTGGATTCTTCTTCACTATAG CATAAGTTGAGCAGAAGCAACCGTGACAAACTTCEST: gi|163990519|gb|ES114093.1|ES114093
genomic: TACCTTGTTAGGGTTTTGTATTTTGGCTTCTGGATTCTTCTTCACTAT-Ggtacgcgctt ... ttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTC
EST: ACCTTTGTTTAGGGTTTTGTATTTTGGCTTCTGGATTCTTCTTCACTATG CATAAGTTGAGCAGAAGCAACCGTGACAAACTTCEST: gi|164212575|gb|ES107854.1|ES107854
genomic: ACC-TTG-TTAGGGTTTTGTATTTTGGCTTCTGGATTCTTCTTCACTATGgtacgcgctt ... ttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTC
EST: TTACCTTGTTAGGGTTTTGTATTTTGGCTTCTGGATTCTTCTTCACTATG CATAAGTTGAGCAGAAGCAACCGTGACAAACTTC
genomic: TTACCTTGTTAGGGTTTTGTATTTTGGCTTCTGGATTCTTCTTCACTATGgtacgcgctt ... ttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTC
tttcagtgattgtcgacatctttgttaatcatatgattggttttgttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATCACAGGAGCTAG
tgttaat putative branch site (score: 3)
ttttgttttct putative PPT
tttgttaatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcgctttctccttctcctccttttgtttttttccctctgctttaggtttgcggatcctcttatggcgtctttgcttttctgattcttagagtttcattttaagtcgagtagaaaacgaacaaggctccttaattttgcgatttcagtgattgtcgacatctttgttaatcatatgattggttttgttttctgtagCATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATCACAGGAGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT