1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagtgaaatgatcaagggtctttccagttttcttttatgttgtgacctgatcaagggtcttttgatgtggagtactaagacccaattttctgatggcagTGTAGATTCAATCGGGAAGTTGCAGGAAAAGCTGCCATTTATGCGTTCTGAGCTTAAAGATGAAC
species | Arabidopsis thaliana |
transcript | AT3G12760.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAG-TTTCCAGGCAAGAATTTATCAGTGGATTACAGGCATTAGG TGTAGATTCAATCGGGAAGTTGCAGGAAAAGCCGCCATTTATGCGTTCTGAEST: gi|86078707|gb|DR374464.1|DR374464
genomic: TGAGTTTTCCAGGCAAGAATTTATCAGTGGATTACAGGCATTAGGgtgagtgaaa ... ctgatggcagTGTAGATTCAATCGGGAAGTTGCAGGAAAAGCTGCCATTTATGCGTTCTGA
EST: GCGTGTGAGTTTTCCAGGCAAGAATTTATCAGTGGATTACAGGCATTAGG TGTAGATTCAATCGGGAAGTTGCAGGAAAAGCTGCCATTTATGCGTTCTGA
genomic: GCGTGTGAGTTTTCCAGGCAAGAATTTATCAGTGGATTACAGGCATTAGGgtgagtgaaa ... ctgatggcagTGTAGATTCAATCGGGAAGTTGCAGGAAAAGCTGCCATTTATGCGTTCTGA
acctgatcaagggtcttttgatgtggagtactaagacccaattttctgatggcagTGTAGATTCAATCGGGAAGTTGCAGGAAAAGCTGCCATTTATGCGTTCTGAGCTTAAAGATGAAC
ttctgat putative branch site (score: 3)
ttttct CT-rich tract
aattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgaaatgatcaagggtctttccagttttcttttatgttgtgacctgatcaagggtcttttgatgtggagtactaagacccaattttctgatggcagTGTAGATTCAATCGGGAAGTTGCAGGAAAAGCTGCCATTTATGCGTTCTGAGCTTAAAGATGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG