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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCAGATGACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTCTAGAGgttcccaattagcaactcatttatctcgtacttttccatttcatgtgttgttaatctcgttgtatctgacccaatcattag

Basic information

species Arabidopsis thaliana
transcript AT3G05520.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05520.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA03G39530.1 (Glycine max), 5'ss of exon 8
TCTGCAGATGACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTCTAGAGgttcccaattagcaactcatttatctcgtacttttccatttcatgtgttgttaatctcgttgtatctgacccaatcattag-------------
 |  | || || || ||  |||||||| | |  |||||  | ||||||||||||||||||||||| ||||| |||||||  |||| |    |  | || || |    ||||  ||   | | |||| |||   || | |  |||   | | || |              
GCCCCTGAAGATTGTGCACTTGCCATAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatttgtc-tttgtgtagctagggtctttc-gttctttctattgt-aatgatgt-gcacatgatttactaatgatcacaacttgacag

upper sequence: AT3G05520.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA19G42150.1 (Glycine max), 5'ss of exon 8
TCTGCAGATGACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTCTAGAGgttcccaattagcaactcatttatctcgtacttttccatttcatgtgttgttaatctcgttgtatctgacccaatcattag-------------
 || | || || || ||  |||||||| | |  |||||  | ||||||||||||||||||||||| ||||| |||||||  | || |    || | || || |    |||| |||   | | |||| |||  ||| | |  |||   | | || |              
GCTCCTGAAGATTGTGCACTTGCCATAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgactttgtc-ttcgtgtagctagggtctttc-attctttctattgt-aatgacgt-gcacatgatttactaatgatcataacttgacag