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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGGAGCTCATTATTTTGAAGAGGGAAATGTGGAATTAGATGCAAAAAAAGATTTCCAAGATTCAACAATATTTCAGgtacctcattttatctgcgaaactgtgtacaataatgtagaccacaagccaggccaggctagcatataatatacaccaagggaacaaatatgtgtaggctctgatataaccttgtcgttcattttttgttccattgacag

Basic information

species Arabidopsis thaliana
transcript AT3G05520.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05520.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os07g23200.1 (Oryza sativa), 5'ss of exon 7
GTAGGAGCTCATTATTTTGAAGAGGGAAATGTGGAATTAGATGCAAAAAAAGATTTCCAAGATTCAACAATATTTCAGgt-acctcattttatctgcgaaactgtgtacaataatgtagaccacaagccaggccaggctagcatataatatacaccaagggaacaaatatgtgtaggctctgatataaccttgtcgttcattttttgttccattgacag
||||| ||||||||||||||||||||||||||| |  | ||| | || |  |||| | | ||||| || ||||| ||||| |  ||||   ||   | |   | | ||   |    |       | |   |         || | |  |    |||  | | |  |||      |   | |                                      
GTAGGTGCTCATTATTTTGAAGAGGGAAATGTGCAGCTGGATACTAACATCGATTGCAAGGATTCCACCATATTGCAGgttagttcatacaatac-ctattttttttatcctggcatgttatgaacgattgatggcatctgcttcttttg---acctcgtgcagtaatccacacactatttc-------------------------------------

upper sequence: AT3G05520.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv14s0060g02220.t01 (Vitis vinifera), 5'ss of exon 7
GTAGGAGCTCATTATTTTGAAGAGGGAAATGTGGAATTAGATGCAAAAAAAGATTTCCAAGATTCAACAATATTTCAGgtacctcattttatctgcgaaactgtg----tacaataatgtagaccacaagccaggccaggctagcatataatatacaccaagggaacaaatatgtgtaggctctgatataaccttgtcgttcattttttgttccattgacag
|| || || ||||| |||||||||||||||||| | |||||||||||| | || | | | ||||||||||||||||||||   |  || ||| ||   || | |     | | ||  |  ||   | || ||| |    |  | ||  |  |  | | ||    ||| | ||  | | |                                           
GTGGGGGCCCATTACTTTGAAGAGGGAAATGTGCAGTTAGATGCAAAACATGAATGCAAGGATTCAACAATATTTCAGgttattatttatatatgtataaatattctattcctattttaaagggaagaaaccaagtggtgtca-cacctttttcaaaacatca-aactactacatatgga------------------------------------------