1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGATTGTCTCATCTTACAGTGAAATTAATGAAAATGAGTACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattattttattgttgttgttcttcattatggtgtgccatgatctgtgaatctaatttaagcttacctctcctctctttgaccag
species | Arabidopsis thaliana |
transcript | AT3G05520.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAG ATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTATEST: gi|86039958|gb|DR335713.1|DR335713
genomic: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattatt ... ctttgaccagATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTAT
EST: ACCTTGATCCAAGARCTGCCCAGGTTGCCATAGTTGATCATGTTAAACAG ATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTATEST: gi|86039968|gb|DR335723.1|DR335723
genomic: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattatt ... ctttgaccagATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTAT
EST: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAG ATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTATEST: gi|86039957|gb|DR335712.1|DR335712
genomic: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattatt ... ctttgaccagATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTAT
EST: ACCTTGATCCAAGARCTGCCCAGGTTGCCATAGTTGATCATGTTAAACAG ATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTATEST: gi|86039966|gb|DR335721.1|DR335721
genomic: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattatt ... ctttgaccagATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTAT
EST: ACCTTGATCCAAGAWCTGCCCAGGTTGCCATAGTTGATCATGTTAAACAG ATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTATEST: gi|86039961|gb|DR335716.1|DR335716
genomic: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattatt ... ctttgaccagATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTAT
EST: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAG ATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTEST: gi|19878114|gb|AU238945.1|AU238945
genomic: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattatt ... ctttgaccagATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTT
EST: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAG ATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTATEST: gi|86039965|gb|DR335720.1|DR335720
genomic: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattatt ... ctttgaccagATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTAT
EST: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAG ATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTATEST: gi|86039959|gb|DR335714.1|DR335714
genomic: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattatt ... ctttgaccagATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTAT
EST: ACCTTGATCCAAGARCTGCCCAGGTTGCCATAGTTGATCATGTTAAACAG ATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTATEST: gi|86039962|gb|DR335717.1|DR335717
genomic: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattatt ... ctttgaccagATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTAT
EST: ACCTTGATCCAAGARCTGCCCAGGTTGCCATAGTTGATCATGTTAAACAG ATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTATEST: gi|86039967|gb|DR335722.1|DR335722
genomic: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattatt ... ctttgaccagATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTAT
EST: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAG ATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTATEST: gi|86039960|gb|DR335715.1|DR335715
genomic: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattatt ... ctttgaccagATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTAT
EST: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAG ATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTAT
genomic: ACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattatt ... ctttgaccagATTTGTACAAAGGTACGGCCTGCAAATGATGAAGAACTTCCTTCTTTGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATTGTCTCATCTTACAGTGAAATTAATGAAAATGAGTACCTTGATCCAAGAACTGCCCAGGTTGCCATAGTTGATCATGTTAAACAGgtacattattttattgttgttgttcttcattatggtgtgccatgatctgtgaatctaatttaagcttacctctcctctctttgaccag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC