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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctcattttatctgcgaaactgtgtacaataatgtagaccacaagccaggccaggctagcatataatatacaccaagggaacaaatatgtgtaggctctgatataaccttgtcgttcattttttgttccattgacagTCTGCAGATGACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTCTAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G05520.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05520.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA03G39530.1 (Glycine max), 3'ss of exon 7
gtacctcattttatctgcgaaactgtgtacaataatgtagaccacaagccaggccaggctagcat-ataatatacaccaagggaacaaatatgtgtaggctctgatataaccttgtcgttcattttttgttccattgacagTCTGCAGATGACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTCTAGAG
                                     |     | ||      |     ||| |  | |||||  | |    |   |  | | ||| |   || || ||    | |  || ||  |||| |    |  ||| |  | || || || ||  |||||||| | |  |||||  | ||||||||||||||||||||||| ||||| |||
------------------------------------ttgagatataaatggaacatttatagaaagacaatatttatct---gtttatgtttctgtcgaagcttatctattaatat--tttatcatttgattttatttcagGCCCCTGAAGATTGTGCACTTGCCATAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG

upper sequence: AT3G05520.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA19G42150.1 (Glycine max), 3'ss of exon 7
gtacctcattttatctgcgaaactgtgtacaataatgtagaccacaagccaggccaggctagcatataatatacaccaagggaacaaatatgtgtaggctctgatataaccttgtcgttcattttttgttccattgacagTCTGCAGATGACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTCTAGAG
                                   | ||||    ||   |        |   | |  ||||  | | |      |  | | ||| |   || || ||    | |  || ||  |||| |    |  ||| || | || || || ||  |||||||| | |  |||||  | ||||||||||||||||||||||| ||||| |||
-----------------------------------tttagatataaatggaatatttattgaaagacgatatttatctatt---tatgtttctgtcgaagcttatctattaatat--tttatcatttgattttatttcagGCTCCTGAAGATTGTGCACTTGCCATAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatatgtgtaggctctgatataaccttgtcgttcattttttgttccattgacagTCTGCAGATGACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTCTAGAG
                  atataac  putative branch site (score: 3)
                                ttcattttttgttcc  putative PPT
                                ttcatttttt  TA-rich tract