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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGTgtaagttcactccttaacgtcaattacaaaaaccaacttagctttaccatcactaagatctaattgtctcgaatcatcatcattccag

Basic information

species Arabidopsis thaliana
transcript AT2G32940.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32940.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: LOC_Os07g16224.1 (Oryza sativa), 5'ss of exon 9
GGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGTgtaagttcac-----tccttaacgtcaattacaaaaac-caacttagctttaccatcactaagatctaattgtctcgaatcatcatcattccag------------
|| || ||||| ||  | ||||||||||| || || ||||||||||||||||  ||||||||| ||||||| ||  |    || || || ||||||||||| ||      |     || | | |    || || ||| | ||    |  || | |    | |  |||| |     |     | |||               
GGTACCTCAAGGCCCACCCATTACCATGTCTTGCTCGATGAGATTGGTTTCTTGCCCGATGACGTGCAGAAACTAGTTTTGTCGCTTTCTTATGTgtaagtacaggatagtttcctactttattcttgaatacacaaatcagaaagatgataatttg--tgtggttgttttattgctctccctttctttgtgatcgtgcag

upper sequence: AT2G32940.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA15G37170.1 (Glycine max), 5'ss of exon 18
GGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGTgtaagttcactccttaacgtcaattacaaaaaccaacttagctttaccatcactaag--atctaattgtctcgaatcatcatcattccag
||||| || || || |  ||||| |||||  ||||||||||||||||||||||  | |||| |||||| ||| | |||||||| || ||||||||||| |    || | |        |||||||     || || |  |    | ||      |      | |  |     ||  | ||| |||
GGAACATCCAGGCCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCGGCAGATGGCTTGCAAAATTTTATCCATTCACTGTCCTATGTgtatgcattctacctttttgtttttacaaagtttcacctacccctgaattgacctgattagtagcctatgcctgtgtattcttatttcag

upper sequence: AT2G32940.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA13G26240.1 (Glycine max), 5'ss of exon 20
GGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGTgtaagt-tcactccttaacgtcaattacaaaaaccaacttagctttaccatcactaagatctaattgtctcgaatcatcatcattccag
||||| || || || |  ||||| |||||  ||||||||||||||||||||||  | |||| |||||| ||| | ||||||||  | ||||||||||| |  |   |||||   ||  || |||||     |||   | |  |     |    || ||  | | ||                  
GGAACATCCAGGCCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCGGCAGATGGCTTGCAAAATTTGATCCATTCGTTGTCCTATGTgtatgcattcttcctttttgtttat-acaaagtttcactacccctggcttatgcatgtatatacgtatttcag----------------

upper sequence: AT2G32940.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: Vv12s0059g01430.t01 (Vitis vinifera), 5'ss of exon 21
GGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGTgtaagttcactccttaacgtcaattacaaaaaccaacttagctttaccatcactaa-gatctaattgtctcgaatcatcatcattccag
||||| ||  | || || ||||| ||||| || |||||||||||| | ||||| || |||||||||||  |||| ||||| || || || ||||||||||    |||   ||  | | ||            |   ||| |   |  | |  |   | |||   |    |  |  | |   |||
GGAACATCTCGCCCAGCACATTATCATGTCTTGCTTGATGAGATTAGCTTCTCTCCTGATGACTTGCAACATCTTATCCACTCCCTATCATATGTgtaagccttctctccaa-attatttctcttctggggttgcacttgaatgttccaagtggaattattaatttctcttttgcttaactcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087969|gb|DR383728.1|DR383728
EST:     GGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGT                         CAACCAACGTAGCACAACTGCAACTTCGATCG
genomic: GGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGTgtaagttcac ... atcattccagCAACCAACGTAGCACAACTGCAACTTCGATCG