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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTGTCGTGGACACCAAGATCGTACACCCGACAAACTACGATTTTTACATGTGTGCTCATGCAGGAAAAATAgtaagtgtagacaaaagtttagcttcactcctcgcacctttattaaaatcaacgctatataatgtttccctctatgatctctcag

Basic information

species Arabidopsis thaliana
transcript AT2G32940.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32940.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA15G37170.1 (Glycine max), 5'ss of exon 16
GAACTGTCGTGGACACCAAGATCGTACACCCGACAAACTACGATTTTTACATGTGTGCTCATGCAGGAAAAATAgtaagtgtagacaaaagtttagcttcact--cctcgcacctttattaaaatcaacgctatataatgtttccctctatgatctctcag-----
| |  || |||||||| |  |||  ||| || | ||| || |||||||||||||||||||||||||| |   |  ||||| ||   |    | ||| ||| |   |||     ||| ||| | ||| |   || |     |||   |  |||   |    |     
GGATGGTTGTGGACACAACAATCACACATCCAAGAAATTATGATTTTTACATgtgtgctcatgcagggatgcttttaagtttatcta----tctagtttccccaccctgttttcttcatttatatccattttacaagcattttagttgcatgtggtaatggtgaag

upper sequence: AT2G32940.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA13G26240.1 (Glycine max), 5'ss of exon 19
GAACTGTCGTGGACACCAAGATCGTACACCCGACAAACTACGATTTTTACATGTGTGCTCATGCAGGAAAAATAgtaagtgtagacaaaagtttagcttc-actcctcgcacctttattaaaatcaacgctatataatgtttccctctatgatctctcag--------------------------------------------------------------------------------------
| || || ||||| || |  ||    || || | ||| || |||||||||||||||||||||||||| |   | |||||| ||   |    | ||||||| ||  |      ||| ||| | ||| |   ||       |||   |  |||   |   ||                                                                                      
GGACGGTTGTGGATACAACAATTACGCATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCAGGGATGCTTgtaagtttaccta----tctagcttccacagccgatttcttcatttatatccattttactagcattttagttgcatgtggtaatagtgaagtgtatttgtctaccaattaaatttctgatgtttcaactttctcacgggccttcttttttctgtttcctcatcaaataatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087969|gb|DR383728.1|DR383728
EST:     TACACCCGACAAACTACGATTTTTACATGTGTGCTCATGCAGGAAAAATA                         GGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTC
genomic: TACACCCGACAAACTACGATTTTTACATGTGTGCTCATGCAGGAAAAATAgtaagtgtag ... gatctctcagGGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTC