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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaatactttttattcttcacccgtcactaggattccatttctttccgtaactatttcatcataaaaaaaacaatgtcgtttgtcagGAACTGTCGTGGACACCAAGATCGTACACCCGACAAACTACGATTTTTACATGTGTGCTCATGCAGGAAAAATA

Basic information

species Arabidopsis thaliana
transcript AT2G32940.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32940.1 (Arabidopsis thaliana), 3'ss of exon 19
lower sequence: GLYMA13G26240.1 (Glycine max), 3'ss of exon 18
gtaaaaaatactttttattcttcacccgt-cactaggattccatttctttccgtaactatttcatcataaaaaaaacaatgtcgtttgtcagGAACTGTCGTGGACACCAAGATCGTACACCCGACAAACTACGATTTTTACATGTGTGCTCATGCAGGAAAAATA
            | | |  |||  |  || |||| | || |  | ||   | | |      || |  ||| | |||   | |   |  ||||| || || ||||| || |  ||    || || | ||| || |||||||||||||||||||||||||| |   | 
-----------gtatgacacttatcttgttcacttgcatacagtatcacccagga------tcgttgtaatataaa---ttttcctcttcagGGACGGTTGTGGATACAACAATTACGCATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCAGGGATGCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087969|gb|DR383728.1|DR383728
EST:     AAGCTAAGGGTCCTGAAAATGTTCCTGCAG                         GAACTGTCGTGGACACCAAGATCGTACACCCGACAAACTACGATTTTTACA
genomic: AAGCTAAGGGTCCTGAAAATGTTCCTGCAGgtaaaaaata ... cgtttgtcagGAACTGTCGTGGACACCAAGATCGTACACCCGACAAACTACGATTTTTACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccatttctttccgtaactatttcatcataaaaaaaacaatgtcgtttgtcagGAACTGTCGTGGACACCAAGATCGTACACCCGACAAACTACGATTTTTACATGTGTGCTCATGCAGGAAAAATA
             ccgtaac  putative branch site (score: 3)
                taactatttcatcata  TA-rich tract