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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtagacaaaagtttagcttcactcctcgcacctttattaaaatcaacgctatataatgtttccctctatgatctctcagGGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGT

Basic information

species Arabidopsis thaliana
transcript AT2G32940.1
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32940.1 (Arabidopsis thaliana), 3'ss of exon 20
lower sequence: LOC_Os07g16224.1 (Oryza sativa), 3'ss of exon 8
-------------------------------gtaagtgtagaca---aaagtttagcttcac---tcctcgcacctttattaaaatca-acgctatataatgtttccctctatgatctctcagGGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGT
                               |    ||  ||||    |  ||| |   ||    |  |||  |  |   ||  ||   |  ||  | | |||       |    ||| |||||| || ||||| ||  | ||||||||||| || || ||||||||||||||||  ||||||||| ||||||| ||  |    || || || |||||
gtaagtcttcttgagccaatattttggaaatgattctgctgacatgtgatatttggggccatacattttcgtgctatatgtatgatggcattctgaaaattgtaaaatgtttgcctctttcagGGTACCTCAAGGCCCACCCATTACCATGTCTTGCTCGATGAGATTGGTTTCTTGCCCGATGACGTGCAGAAACTAGTTTTGTCGCTTTCTTATGT

upper sequence: AT2G32940.1 (Arabidopsis thaliana), 3'ss of exon 20
lower sequence: GLYMA15G37170.1 (Glycine max), 3'ss of exon 17
gtaagtgtagacaaaagtttagcttcactcctcgcacctttattaaaatcaacgctatataatgtt-tccctctatgatctctcagGGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGT
                                                     ||| | |  |  | |  |   |  |  |   ||||||| || || || |  ||||| |||||  ||||||||||||||||||||||  | |||| |||||| ||| | |||||||| || ||||||||
---------------------------------------------------gtgctttttttttctgtttcctcaccaaataatagGGAACATCCAGGCCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCGGCAGATGGCTTGCAAAATTTTATCCATTCACTGTCCTATGT

upper sequence: AT2G32940.1 (Arabidopsis thaliana), 3'ss of exon 20
lower sequence: GLYMA13G26240.1 (Glycine max), 3'ss of exon 19
--------------------------------------------------------------------------------------gtaagtgtagacaaaagtttagcttcactcctcgcacctttattaaaatcaacgctatataatgtttccctctatgatctctcagGGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGT
                                                                                      ||   | |    |  | || |  |||     |  || |||| | |    |    || | |  |||||||    || |  |   ||||||| || || || |  ||||| |||||  ||||||||||||||||||||||  | |||| |||||| ||| | ||||||||  | ||||||||
gtaagtttacctatctagcttccacagccgatttcttcatttatatccattttactagcattttagttgcatgtggtaatagtgaagtgtatttgtctaccaattaaatttctgatgtttcaactttctcacgggcctt-cttttttctgtttcctc--atcaaataatagGGAACATCCAGGCCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCGGCAGATGGCTTGCAAAATTTGATCCATTCGTTGTCCTATGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087969|gb|DR383728.1|DR383728
EST:     TACACCCGACAAACTACGATTTTTACATGTGTGCTCATGCAGGAAAAATA                         GGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTC
genomic: TACACCCGACAAACTACGATTTTTACATGTGTGCTCATGCAGGAAAAATAgtaagtgtag ... gatctctcagGGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgcacctttattaaaatcaacgctatataatgtttccctctatgatctctcagGGAACTTCAAGACCGGCTCATTACCATGTATTACTTGATGAGATTGGTTTCTCCCCCGATGACTTGCAGAATCTCATCCATTCTCTCTCCTATGT
                                               tctctc  CT-rich tract
        tttattaaaatcaa  TA-rich tract