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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcaccaaccacgctaacacttgagatatcttcttttgatgtgttattctctgtgaattgacttcttttcttccgtcttaatatagCTTGGAGGCATCAATTCTCTGTTGGGAATAGAGTACTCTTACAACATTCCATTGATAAACAAAATTCCCACCTTGATTTTGGGTATGGATGTATCTCATG

Basic information

species Arabidopsis thaliana
transcript AT2G32940.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32940.1 (Arabidopsis thaliana), 3'ss of exon 14
lower sequence: GLYMA13G26240.1 (Glycine max), 3'ss of exon 13
------gtatatcaccaaccacgctaacacttgagatatcttcttttgatgtgttattctc---tgtgaattgact--tcttttcttccgtcttaatatagCTTGGAGGCATCAATTCTCTGTTGGGAATAGAGTACTCTTACAACATTCCATTGATAAACAAAATTCCCACCTTGATTTTGGGTATGGATGTATCTCATG
      |  ||| ||  |  |   | |||    | ||| ||  ||||||  || ||   ||   | |   || | |  ||| || | ||  |   |||||||||||||| || ||||||||||||| ||||||| | |||    |  ||||  |||| ||  | |  || ||  |||||||||| |||||||| |||||  
gtaactgagtataactgat-atttttaca---aacataactatttttgacttgataacatcacgtatagtttaaataatctattatgcctgcaatatatagCTTGGAGGAATAAATTCTCTGTTGGCAATAGAGCATTCTGGGCATCTTCCCCTGATTAAAGATACCCCAACGATGATTTTGGGGATGGATGTCTCTCACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttgatgtgttattctctgtgaattgacttcttttcttccgtcttaatatagCTTGGAGGCATCAATTCTCTGTTGGGAATAGAGTACTCTTACAACATTCCATTGATAAACAAAATTCCCACCTTGATTTTGGGTATGGATGTATCTCATG
                                            tcttaat  putative branch site (score: 3)
                          ttgacttcttttcttc  CT-rich tract
                                            tcttaatata  TA-rich tract