1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCAAGACAACAGGGGATACATATCGATGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAGCTAGAgtatgctttttttctttctttctccttataacatctatctctctttattacattcagagttgttgagctcatgagtttgctttgttttttttactgatgtgtttatag
species | Arabidopsis thaliana |
transcript | AT2G24490.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGAAATTGCTCAGCAGTTGAAAATCCCAAAAAACAAGCTAGA GEST: gi|19797959|gb|AU229559.1|AU229559
genomic: TGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAGCTAGAgtatgctttt ... gtgtttatag-
EST: TGAAATTGCTCAGCAGTTGAAAATCCCAAAAAACAAGCTAGA GEST: gi|116392123|gb|EG434715.1|EG434715
genomic: TGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAGCTAGAgtatgctttt ... gtgtttatag-
EST: CATATCGATGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAACTAGA GGGCGTTGTTCAATCGCTGGAAGGAGATGGTCTAATATACTCGACAATCGAEST: gi|86075466|gb|DR371223.1|DR371223
genomic: CATATCGATGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAGCTAGAgtatgctttt ... gtgtttatagGGGCGTTGTTCAATCACTGGAAGGAGATGGTCTAATATACTCGACAATCGA
EST: CATATCGATGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAGCTAGA GGGCGTTGTTCAATCACTGGAAGGAGATGGTCTAATATACTCGACAATCGAEST: gi|116392116|gb|EG434708.1|EG434708
genomic: CATATCGATGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAGCTAGAgtatgctttt ... gtgtttatagGGGCGTTGTTCAATCACTGGAAGGAGATGGTCTAATATACTCGACAATCGA
EST: CATATCGATGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAACTAGA GGGCGTTGTTCAATCGCTGGAAGGAGATGGTCTAATATACTCGACAATCGA
genomic: CATATCGATGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAGCTAGAgtatgctttt ... gtgtttatagGGGCGTTGTTCAATCACTGGAAGGAGATGGTCTAATATACTCGACAATCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAAGACAACAGGGGATACATATCGATGAAATTGCTCAGCAGTTGAAGATCCCAAAAAACAAGCTAGAgtatgctttttttctttctttctccttataacatctatctctctttattacattcagagttgttgagctcatgagtttgctttgttttttttactgatgtgtttatag
- - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT