Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataccatttctagatctctttgtttattaccgttattcgtcaatatggtcaaacttttactcaattgtgtgatgtttttggtataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAGTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGAT

Basic information

species Arabidopsis thaliana
transcript AT2G24490.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86033708|gb|DR329461.1|DR329461
EST:     CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: gi|86033702|gb|DR329455.1|DR329455
EST:     CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: gi|86033704|gb|DR329457.1|DR329457
EST:     CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: gi|86033703|gb|DR329456.1|DR329456
EST:     CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: gi|86033706|gb|DR329459.1|DR329459
EST:     CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: gi|86033711|gb|DR329464.1|DR329464
EST:     CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: gi|86033712|gb|DR329465.1|DR329465
EST:     CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: gi|86033709|gb|DR329462.1|DR329462
EST:     CCAGNGGNGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTG
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTG
EST: gi|86033710|gb|DR329463.1|DR329463
EST:     CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: gi|86033701|gb|DR329454.1|DR329454
EST:     CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTGTGTGACAAANATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: gi|86033707|gb|DR329460.1|DR329460
EST:     CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: gi|19877547|gb|AU238378.1|AU238378
EST:     CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
EST: gi|86033705|gb|DR329458.1|DR329458
EST:     CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAAC                         GTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA
genomic: CCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCTCACTAACAAACgtaaatacca ... tataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtcaatatggtcaaacttttactcaattgtgtgatgtttttggtataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAGTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGAT
                                      tttttggtataatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaataccatttctagatctctttgtttattaccgttattcgtcaatatggtcaaacttttactcaattgtgtgatgtttttggtataattcagGTTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAGTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA