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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAGTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactcggaaactttaccttttgatagatgcaagagttgtttttcggtgcagtggttagtttatgaagtttgtaattggtgttgttgtgcctttcttatag

Basic information

species Arabidopsis thaliana
transcript AT2G24490.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86033708|gb|DR329461.1|DR329461
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033702|gb|DR329455.1|DR329455
EST:     TTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: TTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAA-GATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033704|gb|DR329457.1|DR329457
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033703|gb|DR329456.1|DR329456
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033706|gb|DR329459.1|DR329459
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAANTGACTGTAAAAGATG                         GGTGAGTGAAACTTTTCGACGCTAGAGAAAT
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTT-CGACGCTAGAGAAAT
EST: gi|86033711|gb|DR329464.1|DR329464
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033710|gb|DR329463.1|DR329463
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033701|gb|DR329454.1|DR329454
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGAKG                         GGTGAGTGAAACTTTCGACGCTAKAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033707|gb|DR329460.1|DR329460
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|19877547|gb|AU238378.1|AU238378
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033705|gb|DR329458.1|DR329458
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAMCTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCACTTGTTGGATTAGTGTGTGACAAAGATGAATCTAAAGTCACAGAAGTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactcggaaactttaccttttgatagatgcaagagttgtttttcggtgcagtggttagtttatgaagtttgtaattggtgttgttgtgcctttcttatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG