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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatataatccatcttccatttcgttcaattccaccgattaggctacagatcgaaagtttccgaatcgctaaacgtttctctgtaacaatcgattttggaattgctaaatctgctctgtatatgttttgtgggaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAATGTTTCCAATCCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCT

Basic information

species Arabidopsis thaliana
transcript AT2G24490.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86033708|gb|DR329461.1|DR329461
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
EST: gi|86033702|gb|DR329455.1|DR329455
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
EST: gi|86033704|gb|DR329457.1|DR329457
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
EST: gi|86033703|gb|DR329456.1|DR329456
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
EST: gi|86033706|gb|DR329459.1|DR329459
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
EST: gi|86033711|gb|DR329464.1|DR329464
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
EST: gi|86033712|gb|DR329465.1|DR329465
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
EST: gi|86033709|gb|DR329462.1|DR329462
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGNGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
EST: gi|86033710|gb|DR329463.1|DR329463
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
EST: gi|86033701|gb|DR329454.1|DR329454
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
EST: gi|86033707|gb|DR329460.1|DR329460
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
EST: gi|19877547|gb|AU238378.1|AU238378
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
EST: gi|86033705|gb|DR329458.1|DR329458
EST:     TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAG                         AATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA
genomic: TGTCTTCTCAACCTTCTCAAGCCTACGAATCCTCCTCCTCCACCGCTAAGgtaatataat ... gaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcgattttggaattgctaaatctgctctgtatatgttttgtgggaatatgcagAATCGTGATTTTCAAGGTCTTGTTCCAGTGACGGTGAAGCAAATCACCGAATGTTTCCAATCCAGTGGTGAAAAATCTGGTCTCGTCATCAATGGAATCT
               tgctaaa  putative branch site (score: 2)
                               tatatgtttt  TA-rich tract