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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCGgttagtatctttggtttttgtttgatttatgtggtgagatcacatttttggttttggatgtgttttctaattgttagctgtgaaacag

Basic information

species Arabidopsis thaliana
transcript AT2G24490.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86033708|gb|DR329461.1|DR329461
EST:     GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG                         AGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTTCAGGGC
genomic: GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCGgttagtatct ... tgtgaaacagAGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTT-CAGGGC
EST: gi|86033702|gb|DR329455.1|DR329455
EST:     GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG                         AGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
genomic: GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCGgttagtatct ... tgtgaaacagAGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
EST: gi|86033704|gb|DR329457.1|DR329457
EST:     GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG                         AGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
genomic: GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCGgttagtatct ... tgtgaaacagAGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
EST: gi|86033703|gb|DR329456.1|DR329456
EST:     GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG                         AGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
genomic: GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCGgttagtatct ... tgtgaaacagAGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
EST: gi|86033711|gb|DR329464.1|DR329464
EST:     GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG                         AGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
genomic: GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCGgttagtatct ... tgtgaaacagAGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
EST: gi|86033710|gb|DR329463.1|DR329463
EST:     GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG                         AGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
genomic: GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCGgttagtatct ... tgtgaaacagAGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
EST: gi|86033701|gb|DR329454.1|DR329454
EST:     GGTGAGTGAAACTTTCGACGCTAKAGAAATGGAGTCTGTGCG                         AGATGGAACTTATGTGCGC-TCAGTGGTCATTTGAAGACTTTTCAGGGCAA
genomic: GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCGgttagtatct ... tgtgaaacagAGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
EST: gi|86033707|gb|DR329460.1|DR329460
EST:     GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG                         AGATGGAACTT
genomic: GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCGgttagtatct ... tgtgaaacagAGATGGAACTT
EST: gi|19877547|gb|AU238378.1|AU238378
EST:     GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG                         AGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
genomic: GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCGgttagtatct ... tgtgaaacagAGATGGAACTTATGTGCGCCTCAGTGGTCATTTGAAGACTTTTCAGGGCAA
EST: gi|86033705|gb|DR329458.1|DR329458
EST:     GGTGAGTGAAMCTTTCGACGCTAGAGAAATGGAGTCTGTGCG                         AGATGGAACTTATGTGCGCCTCA
genomic: GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCGgttagtatct ... tgtgaaacagAGATGGAACTTATGTGCGCCTCA