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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttgtatttttggttgtgaaatgcttttgattccgttaccattggcaatagacgttggtatgttctgtataagctttgttagatatttatatgaaatcgtctgttttgtgttgcagGCCTATTATGGACTTCAATGAGGTTACTTTTCACTACATTGAGTGTATACACTTCTACTCCCAGAACTCTGAATCACAG

Basic information

species Arabidopsis thaliana
transcript AT2G24490.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86033702|gb|DR329455.1|DR329455
EST:     CATTTGAAGACTTTTCAGGGCAAAACTCAGCTTCTTGTTTTCTCTGTGAG                         GSCTATTATGGACTTCAATGAGGTTACTTTTCA
genomic: CATTTGAAGACTTTTCAGGGCAAAACTCAGCTTCTTGTTTTCTCTGTGAGgtatgttttg ... tgtgttgcagGCCTATTATGGACTTCAATGAGGTTACTTTTCA
EST: gi|19877547|gb|AU238378.1|AU238378
EST:     CATTTGAAGACTTTTCAGGGCAAAACTCAGCTTCTTGTTTTCTCTGTGAG                         GCCTATTATGGACTTCAATGAGGTTACTTTTCACTACATTGAGTGTATACA
genomic: CATTTGAAGACTTTTCAGGGCAAAACTCAGCTTCTTGTTTTCTCTGTGAGgtatgttttg ... tgtgttgcagGCCTATTATGGACTTCAATGAGGTTACTTTTCACTACATTGAGTGTATACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctgtataagctttgttagatatttatatgaaatcgtctgttttgtgttgcagGCCTATTATGGACTTCAATGAGGTTACTTTTCACTACATTGAGTGTATACACTTCTACTCCCAGAACTCTGAATCACAG
                                      tctgtttt  CT-rich tract
             tttgttagatatttat  TA-rich tract