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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatactcggaaactttaccttttgatagatgcaagagttgtttttcggtgcagtggttagtttatgaagtttgtaattggtgttgttgtgcctttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG

Basic information

species Arabidopsis thaliana
transcript AT2G24490.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86033708|gb|DR329461.1|DR329461
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033702|gb|DR329455.1|DR329455
EST:     TTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: TTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAA-GATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033704|gb|DR329457.1|DR329457
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033703|gb|DR329456.1|DR329456
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033706|gb|DR329459.1|DR329459
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAANTGACTGTAAAAGATG                         GGTGAGTGAAACTTTTCGACGCTAGAGAAAT
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTT-CGACGCTAGAGAAAT
EST: gi|86033711|gb|DR329464.1|DR329464
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033710|gb|DR329463.1|DR329463
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033701|gb|DR329454.1|DR329454
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGAKG                         GGTGAGTGAAACTTTCGACGCTAKAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033707|gb|DR329460.1|DR329460
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|19877547|gb|AU238378.1|AU238378
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
EST: gi|86033705|gb|DR329458.1|DR329458
EST:     GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATG                         GGTGAGTGAAMCTTTCGACGCTAGAGAAATGGAGTCTGTGCG
genomic: GTTAGATTCACTCTTGATGATGGAACAGGACGAATTGACTGTAAAAGATGgtaaatactc ... tttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcagtggttagtttatgaagtttgtaattggtgttgttgtgcctttcttatagGGTGAGTGAAACTTTCGACGCTAGAGAAATGGAGTCTGTGCG
                                         tgcctttctt  CT-rich tract
         ttagtttat  TA-rich tract