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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtccgttagtgaaagtcatgttgtaccttggttaaaagttgggaaagattacttgaaatgtgtctaaaatgattttctctttttctgagttagACAGAGGAAAAGTATCGGCACTATGTTAGTACTTTAACTGAGCGCATCCAGACGTGTGATAATATACTTCACCAG

Basic information

species Arabidopsis thaliana
transcript AT1G73430.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116477890|gb|EG520482.1|EG520482
EST:     TTCTACAAATGGTTTACTGATCTTGAATCAGCGATGAAGTCTGAG                         ACAGAGGAAAAGTATCGGCACTATGTTAGTACTTTAACTGAGCGCATCCAG
genomic: TTCTACAAATGGTTTACTGATCTTGAATCAGCGATGAAGTCTGAGgttagtccgt ... tctgagttagACAGAGGAAAAGTATCGGCACTATGTTAGTACTTTAACTGAGCGCATCCAG
EST: gi|164007910|gb|ES013608.1|ES013608
EST:     ATCAGTTCTACAAATGGTTTACTGATCTTGAATCAGCGATGAAGTCTGAG                         ACAGAGGAAAAGTATCGGCACTATGTTAAGTACTTTAAC
genomic: ATCAGTTCTACAAATGGTTTACTGATCTTGAATCAGCGATGAAGTCTGAGgttagtccgt ... tctgagttagACAGAGGAAAAGTATCGGCACTATGTTA-GTACTTTAAC
EST: gi|164173764|gb|ES040997.1|ES040997
EST:     ATCAGTTCTACAAATGGTTTACTGATCTTGAATCAGCGATGAAGTCTGAG                         ACAGAGGAAAAGTATCGGCACTATGTTAGTACTTTAAC
genomic: ATCAGTTCTACAAATGGTTTACTGATCTTGAATCAGCGATGAAGTCTGAGgttagtccgt ... tctgagttagACAGAGGAAAAGTATCGGCACTATGTTAGTACTTTAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggaaagattacttgaaatgtgtctaaaatgattttctctttttctgagttagACAGAGGAAAAGTATCGGCACTATGTTAGTACTTTAACTGAGCGCATCCAGACGTGTGATAATATACTTCACCAG
                       gtctaaa  putative branch site (score: 3)
                               tgattttctctttttc  CT-rich tract
                        tctaaaatgatttt  TA-rich tract