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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgccatttcttgttgttttggtttaattaccaagcttttacatctactccgcgttaccatagttgagatgtctacattattttgtcaaatatgcaacagAAAGCCAGCAAGCTTATCATTAAGCGATCAACTACAATGGATGGCCAGCTTTTCCTTATCAAGCATCTCCTTATCTTGAGAGAACAG

Basic information

species Arabidopsis thaliana
transcript AT1G73430.2
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73430.1 (Arabidopsis thaliana), 3'ss of exon 18
lower sequence: LOC_Os08g34970.1 (Oryza sativa), 3'ss of exon 18
--------gtgccatttcttgttgttttggtttaattaccaagctttta----catctactccgcgtt--accatagt-tgagatgtctaca--ttattttgtcaaatatgc-aacagAAAGCCAGCAAGCTTATCATTAAGCGATCAACTACAATGGATGGCCAGCTTTTCCTTATCAAGCATCTCCTTATCTTGAGAGAACAG
           || |  ||| |||||   || |   || |||| | | |    ||| |  |  | |||  ||   | | |  ||| |  | |   ||| |  |  |   ||  ||||||| || |||||| | ||    ||   | ||||| |||||||||| ||||||||||| || ||||| || ||||| || |||||||||
gtctgtattctccttcccttattgttcatgtct---taacaagatctaaagaacatgttttatgtgttgaactgcactctttgatattcagagcgtatctgtttgatcctgtgaacagAATGCAAGCAAGGTCATTGCAAAAAAAGCAACTGCAATGGATGGACAGCTTTTCCTAATTAAGCACCTTCTTATTTTAAGAGAACAG

upper sequence: AT1G73430.1 (Arabidopsis thaliana), 3'ss of exon 18
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 3'ss of exon 19
-gtgccatttcttgttgttttggttta--attaccaagcttttacatctactccgcgttaccatagttgagatgtctacattattttgtcaaatatgcaacagAAAGCCAGCAAGCTTATCATTAAGCGATCAACTACAATGGATGGCCAGCTTTTCCTTATCAAGCATCTCCTTATCTTGAGAGAACAG
 | |  | || |   |    ||       ||     |  || | ||  |  | |   |      |       | | ||  ||||| |  |   | |    |||||||| ||||| ||  |  | ||| ||||| |  |||||||||| |||||||||||||| |||||||| ||||| || || || |||
ggagtaaattttcacttcactgaacagctatatttgatgttctgcagtttgttcatatgtatgcacc---actttgtaatttattcttccttttttctttcagAAAGCAAGCAAACTCGTTGTAAAGAGATCATCACCAATGGATGGACAGCTTTTCCTTATAAAGCATCTTCTTATTTTAAGGGAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactccgcgttaccatagttgagatgtctacattattttgtcaaatatgcaacagAAAGCCAGCAAGCTTATCATTAAGCGATCAACTACAATGGATGGCCAGCTTTTCCTTATCAAGCATCTCCTTATCTTGAGAGAACAG
                               attattttgtcaaata  TA-rich tract