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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttttgcatatttaagctttaattaccttcataactcagaatgcaaaaccacatctctcctccacacatatggatatactgatttgtatttcaaccagGTATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAACTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCA

Basic information

species Arabidopsis thaliana
transcript AT1G73430.2
intron # 24
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73430.1 (Arabidopsis thaliana), 3'ss of exon 23
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 3'ss of exon 24
gttttttgcatatttaagctttaattaccttcataactcag-aatgcaaaaccacatctctcctccacacatatggatatactgatttgtatttcaaccagGTATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAACTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCA
  | ||||| |  ||     | ||  |  |  |||| | |  ||   | ||  ||||  |   || |        ||| |   | |  |||| || | ||||||   ||| |  |||| ||||||||||    | |  | | ||||||||| || ||| |||| |||||||||||||| || || ||||||||||| || |
-atctttgcgtcatttccaatcaaaaaaataaataaataaataaattacaaaaacattaccattcaaattgagctgatttcaagttacgtatctccaacagGTAAGTGCTTCCTTACAGCAAGAGTTGCCGAAGGTGATGGAAAAAATGAAGCTTTATCTGCAGAACCCATCAACAAGAACAATTCTTTTCAAGCCAATAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116477892|gb|EG520484.1|EG520484
EST:     AGGAACAAGCTTTCGCGACACCAGATAAGGTGGTTGAACTTGTTCAAAAG                         GTATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAA
genomic: AGGAACAAGCTTTCGCGACACCAGATAAGGTGGTTGAACTTGTTCAAAAGgtatgagata ... tttcaaccagGTATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAA
EST: gi|116477889|gb|EG520481.1|EG520481
EST:     AGGAACAAGCTTTCGCGACCCCAGATAAGGTGGTTGAACTTGTTCAAAAG                         GTATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAA
genomic: AGGAACAAGCTTTCGCGACACCAGATAAGGTGGTTGAACTTGTTCAAAAGgtatgagata ... tttcaaccagGTATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAA
EST: gi|125233333|gb|EL247418.1|EL247418
EST:     ATAAGGTGGTTGAACTTGTTCAAAAG                         GTATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAA
genomic: ATAAGGTGGTTGAACTTGTTCAAAAGgtatgagata ... tttcaaccagGTATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAA
EST: gi|116477896|gb|EG520488.1|EG520488
EST:     AGGAACAAGCTTTCGCGACACCAGATAAGGTGGTTGAACTTGTTCAAAAG                         GTATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAA
genomic: AGGAACAAGCTTTCGCGACACCAGATAAGGTGGTTGAACTTGTTCAAAAGgtatgagata ... tttcaaccagGTATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaaccacatctctcctccacacatatggatatactgatttgtatttcaaccagGTATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAACTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCA
                                 tactgat  putative branch site (score: 2)
                                      atttgtattt  TA-rich tract