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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAACTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCAAgtaagtccatttctctgcaactttatcaaccatgtatattatctttggctggtttgtatatgtgcggttacttgttctaatcccttatgtttgaacccaaatctcttgcgctaattactttgaatactaaatgtgcatcatcatccgatgatatgttttatattcag

Basic information

species Arabidopsis thaliana
transcript AT1G73430.2
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73430.1 (Arabidopsis thaliana), 5'ss of exon 24
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 25
TATACGCTGCGATACAACAAGAGTTGCTTCCGATTTTAGCAAAAATGAAACTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCAAgtaagtccatttctctgcaactttatcaaccatgtatattatctttggctggttt-gtatatgtgcggtta-cttgttctaatcccttatgtttgaacccaaatctcttgcgctaattactttgaatactaaatgtgcatcatcatccgatgatatgttttatattcag
||   ||| |  |||| ||||||||||    | |  | | ||||||||| || ||| |||| |||||||||||||| || || ||||||||||| || ||||||||   |   ||    |    ||  || || | |        ||  |   |  | || || | | ||| | || | | || | || | ||     ||                                                                     
TAAGTGCTTCCTTACAGCAAGAGTTGCCGAAGGTGATGGAAAAAATGAAGCTTTATCTGCAGAACCCATCAACAAGAACAATTCTTTTCAAGCCAATAAAgtaagttgttgattcacacatagaattcacaatttgtccctcacctgagtatctgagaatttgggtgattaacctggtttcatgctttttattactttcc---------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116477892|gb|EG520484.1|EG520484
EST:     CTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCAA                         GACAAATATAGTGGAAGCTCATACGCAAGTGGAGTCTTTGCTCAAAGCTGA
genomic: CTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCAAgtaagtccat ... ttatattcagGACAAATATAGTGGAAGCTCATACGCAAGTGGAGTCTTTGCTCAAAGCTGA
EST: gi|124780992|gb|EH870935.1|EH870935
EST:     CTTTTCAAGCCGATCAA                         GACAAATATAGTGGAAGCTCATACGCAAGTGGAGTCTTTGCTCAAAGCTGA
genomic: CTTTTCAAGCCGATCAAgtaagtccat ... ttatattcagGACAAATATAGTGGAAGCTCATACGCAAGTGGAGTCTTTGCTCAAAGCTGA
EST: gi|116477889|gb|EG520481.1|EG520481
EST:     CTTTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCAA                         GACAAATATAGTGGAAGCTCATACGCAAGTGGAGTCTTTGCTCAAAGCTGA
genomic: CTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCAAgtaagtccat ... ttatattcagGACAAATATAGTGGAAGCTCATACGCAAGTGGAGTCTTTGCTCAAAGCTGA
EST: gi|124935866|gb|EL012817.1|EL012817
EST:     CTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCAA                         GACAAATATAGTGGAAGCTCATACGCAAGTGGAGTCTTTGCTCAAAG
genomic: CTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCAAgtaagtccat ... ttatattcagGACAAATATAGTGGAAGCTCATACGCAAGTGGAGTCTTTGCTCAAAG
EST: gi|116477896|gb|EG520488.1|EG520488
EST:     CTTTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCAA                         GACAAATATAGTGGAAGCTCATACGCAAGTGGAGTCTTTGCTCAAAGCTGA
genomic: CTCTATTTGCAAAACCCATCAACAAGGACCATACTTTTCAAGCCGATCAAgtaagtccat ... ttatattcagGACAAATATAGTGGAAGCTCATACGCAAGTGGAGTCTTTGCTCAAAGCTGA