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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTGGAAAAATGTCTTAAGACAACTTGTGAGGAGTTCATCATGTCAGTAACTAAGCTAGTTGTGGATCCTATGCTTTCATTTGTGACGAAGgtgggttgctcctttcctttttatctgagaaaaatgtttttcacagttttgttaagattctaggcgtcctcgaaaaagtttaagtcagcatcttttgcac...

Basic information

species Arabidopsis thaliana
transcript AT1G73430.2
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73430.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: GLYMA17G04990.1 (Glycine max), 5'ss of exon 22
GAACTGGAAAAATGTCTTAAGACAACTTGTGAGGAGTTCATCATGTCAGTAACTAAGCTAGTTGTGGATCCTATGCTTTCATTTGTGACGAAGgtgggttgctcctttcctttttatctgagaaaaatgtttttcacagttttgtta-agattctaggcgtcctcgaaaaagtttaagtcagcatcttttgcac--
|| ||||||||  | |||||  | |||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| || || |||||   |||    |   |   |||| ||  |          |            | |||| || ||| |    | ||| |     || |  || | | |  |  
GAGCTGGAAAAGAGCCTTAAAGCCACTTGTGAGGAGTTCATCATGTCAGTTACTAAGCTTGTTGTGGATCCTTTGCTTTCATTCGTTACAAAGgt---ttgtctgtaaacaagttatttgttactttgccagctggtgaaccaaaaacagatccttggctttaaagcaaaggcacttgtaaatatatatggttctt

upper sequence: AT1G73430.1 (Arabidopsis thaliana), 5'ss of exon 22
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 5'ss of exon 23
GAACTGGAAAAATGTCTTAAGACAACTTGTGAGGAGTTCATCATGTCAGTAACTAAGCTAGTTGTGGATCCTATGCTTTCATTTGTGACGAAGgtgggttgctcctttccttt-ttatctgagaaaaatgtttttcacagttttgttaagattctaggcgtcctcgaaaaagtttaagtcagcatcttttgcac--------
|||||||| ||| | || ||  | |||||||||||||| || ||||| || |||||||||||||||||||| |||||||||||||| || |||||  |||     | ||  |  | || |    |||  |   |   ||||| |  |  ||| ||      |   |||||| | ||| | || |  ||  | |         
GAACTGGAGAAAAGCCTCAAAGCCACTTGTGAGGAGTTTATTATGTCGGTCACTAAGCTAGTTGTGGATCCCATGCTTTCATTTGTTACTAAGgtttgttctctttgtctatcatcatatttttaaagggaaat---cagttcttatgtgatact------ctcagaaaaactgtaatttagaaatttcagaaaacaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116477892|gb|EG520484.1|EG520484
EST:     TGTCAGTAACTAAGCTAGTTGTGGATCCTATGCTTTCATTTGTGACGAAG                         GTCACAGCCATAAAAGTTGCTCTTTCCTCCGGAACTCAGAATCACAAAGTT
genomic: TGTCAGTAACTAAGCTAGTTGTGGATCCTATGCTTTCATTTGTGACGAAGgtgggttgct ... gtatatgcagGTCACAGCCATAAAAGTTGCTCTTTCCTCCGGAACTCAGAATCACAAAGTT
EST: gi|116477889|gb|EG520481.1|EG520481
EST:     TGTCAGTAACTAAGCTAGTTGTGGATCCTATGCTTTCATTTGTGACGAAG                         GTCACAGCCATAAAAGTTGCTCTTTCCTCCGGAACTCAGAATCACAAAGTT
genomic: TGTCAGTAACTAAGCTAGTTGTGGATCCTATGCTTTCATTTGTGACGAAGgtgggttgct ... gtatatgcagGTCACAGCCATAAAAGTTGCTCTTTCCTCCGGAACTCAGAATCACAAAGTT