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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATCTTGATCTCCATGCTGTCTTATGGTTAGAAACATATCTAACGAAGTGGCCAAAAACATTTATAGTCGTTTCCCATGCTAGGGAATTCTTGAACACGgtacatttttttctctagtgatctccttgcagttattgtttccccaatatctccggatatgtgtaaaccatatgtttggttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G64550.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G64550.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os02g58020.2 (Oryza sativa), 5'ss of exon 7
CCATCTTGATCTCCATGCTGTCTTATGGTTAGAAACATATCTAACGAAGTGGCCAAAAACATTTATAGTCGTTTCCCATGCTAGGGAATTCTTGAACACGgtacatttttttctc-tagtgatctccttgca--gttattgtttccccaatatctccgga-tatgtgtaaaccatatgt---ttggttgcag---------------------------------------------------------
 |||||||||||||||||||| ||||||||||||||||||||   ||| |||||||| ||||| || || || || ||||||||||| ||  | || ||||||     | |  |  |  |||||   |   |   | ||       | ||| |   | ||   |   |||  |||||||    |  |||||                                                          
TCATCTTGATCTCCATGCTGTGTTATGGTTAGAAACATATCTCCTGAAATGGCCAAAGACATTCATTGTTGTATCACATGCTAGGGAGTTTCTTAATACGgtatgcagtatgatgattatgatcatgtcatattatcatgaaggagctaattttgacagagcgtccttaattcatatgtagtatatttgcatgtgcatttttttccttgtcatgtaaatcacttaatgctgatagcaataaattcttag

upper sequence: AT1G64550.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G013890_T01 (Zea mays), 5'ss of exon 7
CCATCTTGATCTCCATGCTGTCTTATGGTTAGAAACATATCTAACGAAGTGGCCAAAAACATTTATAGTCGTTTCCCATGCTAGGGAATTCTTGAACACGgta--------catttttttctctagtgatctccttg--cagttattgtttcccca-atatctccggatatgtgtaaaccatatgtttggttgcag-------------------------
|||||||||||| |||||||| |||||| ||||||| |||||   |||||||||||| ||||| || || || || || || ||||| || ||||| ||||||        || | |  | ||    || ||  |||  ||    |||      || || | ||      |||||  |    | ||||  | |  |                         
CCATCTTGATCTTCATGCTGTGTTATGGCTAGAAACTTATCTCCTGAAGTGGCCAAAGACATTCATTGTTGTATCACACGCAAGGGAGTTTTTGAATACGgtatgaacacccaatatcatttcataggagctaattggacaaaatttgcactagcacatttttcttttcttgtgtggatttgaagttta-tagtggatatttgacaacctgaactttttag

upper sequence: AT1G64550.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G10530.1 (Glycine max), 5'ss of exon 6
CCATCTTGATCTCCATGCTGTCTTATGGTTAGAAACATATCTAACGAAGTGGCCAAAAACATTTATAGTCGTTTCCCATGCTAGGGAATTCTTGAACACGgta-catttttttctctagtgatct--ccttgcagtt-attgtttccccaatatctccggatatgtgtaaaccatatgttt--ggttgcag-------------
 ||||||||||| ||||||||||||||| | ||| | ||  |    || ||||||||||||||||| || ||||| |||||||| ||||| || ||||||||| ||| |     | |  | || |   || |   ||  ||| ||      | ||||   || |||    | ||||| |||    |||                
TCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCGTACTTGGTTAAATGGCCAAAAACATTTATCGTTGTTTCTCATGCTAGAGAATTTTTAAACACGgtaacatatcggcttatcttaatttgatctggtgttttgttggttaagtgctttctcaaaatgtgttcccagcatattttttaacttgttaactgcatgcccag

upper sequence: AT1G64550.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G16170.1 (Glycine max), 5'ss of exon 6
CCATCTTGATCTCCATGCTGTCTTATGGTTAGAAACATATCTAACGAAGTGGCCAAAAACATTTATAGTCGTTTCCCATGCTAGGGAATTCTTGAACACGgta-catttttttctctagtgatctccttgcagttattgtttccccaata---tctccggatatgtgtaaaccatatgttt---ggttgcag-------------
 ||||||||||| ||||||||||||||| | ||| | ||  |    || ||||||||||||||||| || ||||| |||||||| ||||| || ||||||||| ||| |     | |  | || |  ||     | |||||     |||    ||||   || |||    | ||||| |||     |||                
TCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCTTACTTGGTTAAATGGCCAAAAACATTTATTGTTGTTTCTCATGCTAGAGAATTTTTAAACACGgtaacatatcggcttatcttaatttgatttggtgttttgttggttaaatgctttctctaaatgtgttcccagcatatctttttaacttgttaactgcatgcccag

upper sequence: AT1G64550.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv02s0025g02160.t01 (Vitis vinifera), 5'ss of exon 7
CCATCTTGATCTCCATGCTGTCTTATGGTTAGAAACATATCTAACGAAGTGGCCAAAAACATTTATAGTCGTTTCCCATGCTAGGGAATTCTTGAACACGgta---catttttttctctagtgatctcc--ttgcag---------ttattgtttccccaatatctccggatatgtgtaa-accatatgtttggttgcag-----------------------
||||||||| || |||||||| |||||| | || || || ||   ||| |||||||||||| ||||||| ||||| |||||||| ||||||||||||||||||    |||    |  || |  || |||  ||| ||         |||||| ||      | | ||   | || ||  | | |||   ||  |  |                          
CCATCTTGACCTTCATGCTGTTTTATGGCTGGAGACTTACCTGGTGAAATGGCCAAAAACAGTTATAGTTGTTTCTCATGCTAGAGAATTCTTGAACACGgtaacatattcaccttccttgatatttccagttgaagataaaagtattattgattagattgtttttctcaaaatttgccacaacattctttgagaagtttttcattaacttttctttttccag