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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTGGACCGACTGGCTCATGTGGATCAAGTTATTAATGATCCTGAgtaagcgagcccctcttatatatatgcttaactactttcaaatgatattaggaatgatgctataatctgatatttgataaatttgctacagtacgattcgatgcttactctcagctccagccttttatgcattaacctcttgtcttatttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G64550.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G64550.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv02s0025g02160.t01 (Vitis vinifera), 5'ss of exon 10
GCATTGGACCGACTGGCTCATGTGGATCAAGTTATTAATGATCCTGAgtaagcgagcccctcttatatatatgcttaactactttcaaatgatattaggaatgatgctataatctgatatttgataaatttgctacagtacgattcgatgcttactctcagctccagccttttatgcattaacctcttgtcttatttttgcag
|||||||| ||  ||| |||||||||| | |||||||||||||||||||| |  |   | || || || | |   |    || ||        ||  ||  | ||  |  |||||  | ||   |    |||||    |    ||     |  |                                                 
GCATTGGATCGGTTGGGTCATGTGGATGAGGTTATTAATGATCCTGAgtatgtaattgcttccta-atgtgtctgtgtgcaccttgggtgtgcatatgg--ttatatttcaatct--tgttctgtgg--ttgcttttattttttttagcccaga-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125227307|gb|EL241392.1|EL241392
EST:     AAGGCATTGGACCGACTGGCTCATGTGGATCAAGTTATTAATGATCCTGA                         CTATAAATTTGAATTCCCAACTCCTGACGATAAGCCTGGACCTCCC
genomic: AAGGCATTGGACCGACTGGCTCATGTGGATCAAGTTATTAATGATCCTGAgtaagcgagc ... atttttgcagCTATAAATTTGAATTCCCAACTCCTGACGATAAGCCTGGACCTCCC