1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GGAGTACCAGAACAAAAGCTGAGAAGTCACTTGGGTTCTCTTGGGGTAACTGGAAATCTTGCACTGCAGCCCATGTACACTTTATCAGgtatacttcgggtatttggagttgtataaccacaatattctagatgcaggccctagaatgaaattggaactagtcaatttttatgtgttgtggcttgttacgttcactaatgtgttttatgttttggggtgtgaatgggaaattag
species | Arabidopsis thaliana |
transcript | AT1G64550.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TCTTGGGGTAACTGGAAATCTTGCACTGCAGCCCATGTACACTTTATCAG GTGGTCAGAAAAGCAEST: gi|124792949|gb|EH882628.1|EH882628
genomic: TCTTGGGGTAACTGGAAATCTTGCACTGCAGCCCATGTACACTTTATCAGgtatacttcg ... gggaaattagGTGGTCAGAAAAGCA
EST: TCTTGGGGTAACTGGAAATCTTGCACTGCAGCCCATGTACACTTTATCAG GTGGTCAGAAAAGCAGAGTTGCEST: gi|124733842|gb|EH825244.1|EH825244
genomic: TCTTGGGGTAACTGGAAATCTTGCACTGCAGCCCATGTACACTTTATCAGgtatacttcg ... gggaaattagGTGGTCAGAAAAGCAGAGTTGC
EST: TCTTGGGGTAACTGGAAATCTTGCACTGCAGCCCATGTACACTTTATCAG GTGGTCAGAAAAGCAGAGTTGCATTEST: gi|125022392|gb|EL094661.1|EL094661
genomic: TCTTGGGGTAACTGGAAATCTTGCACTGCAGCCCATGTACACTTTATCAGgtatacttcg ... gggaaattagGTGGTCAGAAAAGCAGAGTTGCATT
EST: TGTACACTTTATCAG GTGGTCAGAAAAGCAGAGTTGCATTTGCGAAGATAACATTCAAGAAACCAC
genomic: TGTACACTTTATCAGgtatacttcg ... gggaaattagGTGGTCAGAAAAGCAGAGTTGCATTTGCGAAGATAACATTCAAGAAACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTACCAGAACAAAAGCTGAGAAGTCACTTGGGTTCTCTTGGGGTAACTGGAAATCTTGCACTGCAGCCCATGTACACTTTATCAGgtatacttcgggtatttggagttgtataaccacaatattctagatgcaggccctagaatgaaattggaactagtcaatttttatgtgttgtggcttgttacgttcactaatgtgttttatgttttggggtgtgaatgggaaattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG