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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGCTACAAATACTTTTTCAGGAGGATGGAGAATGCGAATTGCACTTGCTCGTGCACTATTTATAGAGCCTGATTTGTTGTTGCTTGATGAACCTACGgtgtgttttctttgtaaggtttcccttattagatcaatatattttcaggtttctgacattcttttcctctcttttggtag

Basic information

species Arabidopsis thaliana
transcript AT1G64550.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G64550.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA13G10530.1 (Glycine max), 5'ss of exon 5
GAAAGCTACAAATACTTTTTCAGGAGGATGGAGAATGCGAATTGCACTTGCTCGTGCACTATTTATAGAGCCTGATTTGTTGTTGCTTGATGAACCTACGgtgtgttttctttgtaaggtttcccttattagatcaatatattttcaggtttctgacattcttttcctctcttttggtag--
||| || ||||| || ||||| ||||||||| | |||||||| || |||||||||||| | ||||||||||||||| | ||| | |||||||| ||||||||   |  || ||   ||   || |||    |||  ||  ||     ||||| |   |||  |    | | ||||  |    
GAAGGCAACAAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCATTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACGgttactcatcattcccag---tctctttcgtgattcatggatgccttggtttatagaatttatgaattttattttattgcag

upper sequence: AT1G64550.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G16170.1 (Glycine max), 5'ss of exon 5
GAAAGCTACAAATACTTTTTCAGGAGGATGGAGAATGCGAATTGCACTTGCTCGTGCACTATTTATAGAGCCTGATTTGTTGTTGCTTGATGAACCTACGgtgtgttttctttgtaaggtttcccttattagatcaatatattttcaggtttctgacattcttttcctctcttttggtag--
 || || ||||| || ||||| ||||||||| | |||||||| || |||||||||||| | ||||||||||||||| | ||| | |||||||| ||||||||   |  || ||  ||| ||||  | ||  |||  ||  ||     ||||| |   |||  |    | | ||||  |    
AAAGGCAACAAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCATTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACGgttactcatcattccaag-tttctttcat--gattcatggatgccttggtttatagaatttatgaattttgttttattgcag

upper sequence: AT1G64550.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv02s0025g02160.t01 (Vitis vinifera), 5'ss of exon 6
GAAAGCTACAAATACTTTTTCAGGAGGATGGAGAATGCGAATTGCACTTGCTCGTGCACTATTTATAGAGCCTGATTTGTTGTTGCTTGATGAACCTACGgtgtgttttctttgtaaggtttcccttattagatcaatatatttt----caggttt--------ctgacattcttt--tcctctcttttggtag
 ||||| ||||| || ||||| ||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||  | ||||||||||| |||||   |  |  |||  ||   | | | |    ||   ||||||      |||  ||        ||  |||| |||  |  | | |||| | ||
TAAAGCGACAAAAACCTTTTCTGGAGGATGGCGAATGCGAATTGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATTTATTACTACTTGATGAACCCACGgtacatcatgattgatagaacttcttcagagtatatgtatattacttggcagaattgggtaaaacttgcattttttatttttatttttttgcag