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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgagcccctcttatatatatgcttaactactttcaaatgatattaggaatgatgctataatctgatatttgataaatttgctacagtacgattcgatgcttactctcagctccagccttttatgcattaacctcttgtcttatttttgcagCTATAAATTTGAATTCCCAACTCCTGACGATAAGCCTGGACCTCCCATCATCAGTTTTAG

Basic information

species Arabidopsis thaliana
transcript AT1G64550.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125227307|gb|EL241392.1|EL241392
EST:     AAGGCATTGGACCGACTGGCTCATGTGGATCAAGTTATTAATGATCCTGA                         CTATAAATTTGAATTCCCAACTCCTGACGATAAGCCTGGACCTCCC
genomic: AAGGCATTGGACCGACTGGCTCATGTGGATCAAGTTATTAATGATCCTGAgtaagcgagc ... atttttgcagCTATAAATTTGAATTCCCAACTCCTGACGATAAGCCTGGACCTCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttactctcagctccagccttttatgcattaacctcttgtcttatttttgcagCTATAAATTTGAATTCCCAACTCCTGACGATAAGCCTGGACCTCCCATCATCAGTTTTAG
                            cattaac  putative branch site (score: 2)
                                  cctcttgtcttatttt  CT-rich tract
                                         tcttattttt  TA-rich tract