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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCATCATTTGGCTACCCTGGTGGTCCGTTGTTGTTTAGGAACCTAAATTTCGGAATAGATCTGGACAGCCGTATTGCAAgtaagaaggctccccccctctcccttgattatgagatcacacagatgatacatgtttataaaccttcatctatcatatgtggaaacaacaagtgcagcatcaaagaacatgtagaacttaaacttttgatgttctccccagaattttaacctctatatatggttttctcgtcgatttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G64550.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G64550.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv02s0025g02160.t01 (Vitis vinifera), 5'ss of exon 12
TGATGCATCATTTGGCTACCCTGGTGGTCCGTTGTTGTTTAGGAACCTAAATTTCGGAATAGATCTGGACAGCCGTATTGCAAgtaagaag-gctccccccctctc----ccttgattatgagatcacacagatgatacatgtttataaaccttcatctatcatatgtggaaacaacaagtgcagcatcaaagaacatgtagaacttaaacttttgatgttctccccagaattttaacctctatatatggttttctcgtcgatttgcag
||||||||||||||| || ||||| || || || || |||| |||  | ||||| || |||||||| |||||||| ||||||||||||||  | |       ||||          ||||   || ||||      || ||| |     |   | || | |||  | |  | ||  ||  | |   |                                                                                  
TGATGCATCATTTGGTTATCCTGGGGGCCCCTTATTATTTAAGAATTTGAATTTTGGGATAGATCTAGACAGCCGCATTGCAAgtaagaattgttttttgaatctcaaatttccatttatagaataacac---cattagatgct---ggatgcttatgtctcaagtctcaatactgcactttccctact--------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164114234|gb|ES048848.1|ES048848
EST:     GTTGTTTAGGAACCTAAATTTCGGAATAGATCTGGACAGCCGTATTGCAA                         TGGTGGGACCCAATGGTATTGGTAAATCAACA
genomic: GTTGTTTAGGAACCTAAATTTCGGAATAGATCTGGACAGCCGTATTGCAAgtaagaaggc ... cgatttgcagTGGTGGGACCCAATGGTATTGGTAAATCAACA