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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatgcatgagcttttgtgaaccatctacgtctcagcgatttcaaaattacaatcctatttatttgtctttttgactcaatttatctgggaatttcagGAGAATTTCACTGCTGCACGGATGGTATTGGCGGCAAGTGGAGTAGAACATGAGGAACTTTTAAAAGTTGCTGAGCCATTAACTTCTGACCTTCCTAATG

Basic information

species Arabidopsis thaliana
transcript AT1G51980.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116431222|gb|EG473814.1|EG473814
EST:     AGTCTGCTTTAGATAGATTGAATGGGGAGCTCTTGGAAGAGTTTATGACT                         GAGAATTTCACTGCTGCACGGATGGTATTGGCGGCAAGTGGAGTAGAACAT
genomic: AGTCTGCTTTAGATAGATTGAATGGGGAGCTCTTGGAAGAGTTTATGACTgtaagaatgc ... ggaatttcagGAGAATTTCACTGCTGCACGGATGGTATTGGCGGCAAGTGGAGTAGAACAT
EST: gi|125212401|gb|EL227355.1|EL227355
EST:     AGTCTGCTTTAGATAGATTGAATGGGGAGCTCTTGGAAGAGTTTATGACT                         GAGAATTTCACTGCT
genomic: AGTCTGCTTTAGATAGATTGAATGGGGAGCTCTTGGAAGAGTTTATGACTgtaagaatgc ... ggaatttcagGAGAATTTCACTGCT
EST: gi|116431221|gb|EG473813.1|EG473813
EST:     AGTCTGCTTTAGATAGATTGAATGGGGAGCTCTTGGAAGAGTTTATGACT                         GAGAATTTCACTGCTGCACGGATGGTATTGGCGGCAAGTGGAGTAGAACAT
genomic: AGTCTGCTTTAGATAGATTGAATGGGGAGCTCTTGGAAGAGTTTATGACTgtaagaatgc ... ggaatttcagGAGAATTTCACTGCTGCACGGATGGTATTGGCGGCAAGTGGAGTAGAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaattacaatcctatttatttgtctttttgactcaatttatctgggaatttcagGAGAATTTCACTGCTGCACGGATGGTATTGGCGGCAAGTGGAGTAGAACATGAGGAACTTTTAAAAGTTGCTGAGCCATTAACTTCTGACCTTCCTAATG
                          ttttgac  putative branch site (score: 3)
             tatttatttgtctttt  TA-rich tract