Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttttaactctcgcaccctctacttacataaaaatacttaaatgttgccaatttgtttaacttgatccaaaccattatatgttatgaatgtgttcaaacggttttcctgtgccagATGATTGCAGCAGAAGACATTGGTAGACAGATACTTACATACGGAGAGAG

Basic information

species Arabidopsis thaliana
transcript AT1G51980.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124917248|gb|EH991122.1|EH991122
EST:     GTGCCAAGGCAGCCACAAAATCTGCAGTTCTGATGAATTTGGAATCTCGG                         ATGATTGCAGCAGAAGACATTGGTAGACAGATACT
genomic: GTGCCAAGGCAGCCACAAAATCTGCAGTTCTGATGAATTTGGAATCTCGGgtatattttt ... cctgtgccagATGATTGCAGCAGAAGACATTGGTAGACAGATACT
EST: gi|125210040|gb|EL224994.1|EL224994
EST:     CAAAATCTGCAGTTCTGATGAATTTGGAATCTCGG                         ATGATTGCAGCAGAAGACATTGGTAGACAGATACTTACATACGGAGAGAGG
genomic: CAAAATCTGCAGTTCTGATGAATTTGGAATCTCGGgtatattttt ... cctgtgccagATGATTGCAGCAGAAGACATTGGTAGACAGATACTTACATACGGAGAGAGG
EST: gi|125187333|gb|EL202287.1|EL202287
EST:     GTGCCAAGGCAGCCACAAAATCTGCAGTTCTGATGAATTTGGAATCTCGG                         ATGATTGCAGCAGAAGACATTGGTAGACAGATACTTACA
genomic: GTGCCAAGGCAGCCACAAAATCTGCAGTTCTGATGAATTTGGAATCTCGGgtatattttt ... cctgtgccagATGATTGCAGCAGAAGACATTGGTAGACAGATACTTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgatccaaaccattatatgttatgaatgtgttcaaacggttttcctgtgccagATGATTGCAGCAGAAGACATTGGTAGACAGATACTTACATACGGAGAGAG
                                         ttttcctgt  CT-rich tract
             attatatgttatgaat  TA-rich tract