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CAATTCTTGAAGTCAGTAGACCAACTAACCTTGAAAGACATTGCAGACTTCACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaactttcacttttttcttatcaatcttttacaaaccaagatctagtgtcttaatattgtttatcgtgtttttgtttttggcag
species | Arabidopsis thaliana |
transcript | AT1G51980.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CAAAGCCTTTGTACAATGGGTTCCTTTGGTAGATG TGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCEST: gi|116429360|gb|EG471952.1|EG471952
genomic: CAAAGCCTTTG-ACAATGGGTTCCTTTGG-AGATGgtaaacaact ... tttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGC
EST: CACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATG TGTTGGCTGTTCCGAGCTATGACACAATEST: gi|164068776|gb|ES119341.1|ES119341
genomic: CACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaact ... tttttggcagTGTTGGCTGTTCCGAGCTATGACACAAT
EST: CCTTTGACAATGGGTTCCTTTGGAGATG TGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCAEST: gi|164044915|gb|ES069110.1|ES069110
genomic: CCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaact ... tttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTGAAGCA
EST: CCTTTGACAATGGGTTCCTTTGGAGATG TGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTTAGAAAGEST: gi|124886124|gb|EH965026.1|EH965026
genomic: CCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaact ... tttttggcagTGTTGGCTGTTCCGAGCTATGACACAATAAGCAGCAAATTTCGTT-GAA-G
EST: CACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATG TGTTGGACTGTTCCGAGCTATGACACAATAAG
genomic: CACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaact ... tttttggcagTGTTGG-CTGTTCCGAGCTATGACACAATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATTCTTGAAGTCAGTAGACCAACTAACCTTGAAAGACATTGCAGACTTCACCAGCAAGGTTATTTCAAAGCCTTTGACAATGGGTTCCTTTGGAGATGgtaaacaactttcacttttttcttatcaatcttttacaaaccaagatctagtgtcttaatattgtttatcgtgtttttgtttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG