1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CACTATTGATGCTCTTAAGACCTATGTCCCTGAAATGGTTGAAGTTCTTATTGACAGTGTTAGAAACCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAGgtagatcattttttttttccttttgtattattctgataactgtgttgaaacttttatgtgacttttagccatgtgtcgatgatcttttccgcag
species | Arabidopsis thaliana |
transcript | AT1G51980.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGGGAAGTGAATGAAGAG CTACGGAAGATGAAGGTAGTAGATAGCGGAACTTGCAAAGAACCCTATGGGEST: gi|164182442|gb|ES115959.1|ES115959
genomic: CTGGGAAGTGAATGAAGAGgtagatcatt ... ttttccgcagCTACGGAAGATGAAGGTAG-AGATAGCGGAACTTGCAAAGAACCCTATGGG
EST: CTGGGAAGTGAATGAAGAG CTACGGAAGATGAAGGTAGAGATAGCGGAACTTGCAAAGAACCCTATGGGTEST: gi|116431222|gb|EG473814.1|EG473814
genomic: CTGGGAAGTGAATGAAGAGgtagatcatt ... ttttccgcagCTACGGAAGATGAAGGTAGAGATAGCGGAACTTGCAAAGAACCCTATGGGT
EST: TTGACAGTGTTAGAAACCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAG CTACGGAAGATGAAGGTAGAGATAGCGGAACTTGCAAAGAACCCTATGGGTEST: gi|116431237|gb|EG473829.1|EG473829
genomic: TTGACAGTGTTAGAAACCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAGgtagatcatt ... ttttccgcagCTACGGAAGATGAAGGTAGAGATAGCGGAACTTGCAAAGAACCCTATGGGT
EST: TTGACAGTGTTAGAAACCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAG CTACGGAAGATGAAGGTAGAGATAGCGGAACTTGCAAAGAACCCTATGGGTEST: gi|116451725|gb|EG494317.1|EG494317
genomic: TTGACAGTGTTAGAAACCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAGgtagatcatt ... ttttccgcagCTACGGAAGATGAAGGTAGAGATAGCGGAACTTGCAAAGAACCCTATGGGT
EST: TTGACAGTGTTAGAAACCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAG CTACGGAAGATGAAGGTAGAGATAEST: gi|116431221|gb|EG473813.1|EG473813
genomic: TTGACAGTGTTAGAAACCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAGgtagatcatt ... ttttccgcagCTACGGAAGATGAAGGTAGAGATA
EST: TTGACAGTGTTAGAAACCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAG CTACGGAAGATGAAGGTAGAGATAGCGGAACTTGCAAAGAACCCTATGGGT
genomic: TTGACAGTGTTAGAAACCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAGgtagatcatt ... ttttccgcagCTACGGAAGATGAAGGTAGAGATAGCGGAACTTGCAAAGAACCCTATGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTATTGATGCTCTTAAGACCTATGTCCCTGAAATGGTTGAAGTTCTTATTGACAGTGTTAGAAACCCTGCTTTCTTGGACTGGGAAGTGAATGAAGAGgtagatcattttttttttccttttgtattattctgataactgtgttgaaacttttatgtgacttttagccatgtgtcgatgatcttttccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA