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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATTGCAGCAGAAGACATTGGTAGACAGATACTTACATACGGAGAGAGgtatgtatacgcagaacttcatttgaaaacccgaagaagttcactagatctccatagttttcttcaattccagacacatcataatttgtggtttttacaaaatcttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G51980.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124858449|gb|EH942886.1|EH942886
EST:     TTGGTAGACAGATACTTACATACGGAGAGAG                         GAAACCAGTTGATCAATTCTTGAAGTCAGTAGACCAACTAACCTTGAAAGA
genomic: TTGGTAGACAGATACTTACATACGGAGAGAGgtatgtatac ... aatcttgcagGAAACCAGTTGATCAATTCTTGAAGTCAGTAGACCAACTAACCTTGAAAGA
EST: gi|125016691|gb|EL088960.1|EL088960
EST:     TGATTGCAGCAGAAGACATTGGTAGACAGATACTTACATACGGAGAGAG                         GAAACCAGTTGATCAATTCTTGAAGTCAGTAGACCAACTAACCTTGAAAGA
genomic: TGATTGCAGCAGAAGACATTGGTAGACAGATACTTACATACGGAGAGAGgtatgtatac ... aatcttgcagGAAACCAGTTGATCAATTCTTGAAGTCAGTAGACCAACTAACCTTGAAAGA
EST: gi|116429360|gb|EG471952.1|EG471952
EST:     TAGACAGATACTTACATACGGAGAGAG                         GAAACCAGTTGATCAATTCTTGAAGTCAGTAGACCAACTAACCTTGAAAGA
genomic: TAGACAGATACTTACATACGGAGAGAGgtatgtatac ... aatcttgcagGAAACCAGTTGATCAATTCTTGAAGTCAGTAGACCAACTAACCTTGAAAGA
EST: gi|125273225|gb|EL287310.1|EL287310
EST:     ACTTACATACGGAGAGAG                         GAAACCAGTTGATCAATTCTTGAAGTCAGTAGACCAACTAACCTTGAAAGA
genomic: ACTTACATACGGAGAGAGgtatgtatac ... aatcttgcagGAAACCAGTTGATCAATTCTTGAAGTCAGTAGACCAACTAACCTTGAAAGA