1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTAACCAGGCACATCTTGATCGTGCCAAGGCAGCCACAAAATCTGCAGTTCTGATGAATTTGGAATCTCGGgtatatttttaactctcgcaccctctacttacataaaaatacttaaatgttgccaatttgtttaacttgatccaaaccattatatgttatgaatgtgttcaaacggttttcctgtgccag
species | Arabidopsis thaliana |
transcript | AT1G51980.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTGCCAAGGCAGCCACAAAATCTGCAGTTCTGATGAATTTGGAATCTCGG ATGATTGCAGCAGAAGACATTGGTAGACAGATACTEST: gi|125210040|gb|EL224994.1|EL224994
genomic: GTGCCAAGGCAGCCACAAAATCTGCAGTTCTGATGAATTTGGAATCTCGGgtatattttt ... cctgtgccagATGATTGCAGCAGAAGACATTGGTAGACAGATACT
EST: CAAAATCTGCAGTTCTGATGAATTTGGAATCTCGG ATGATTGCAGCAGAAGACATTGGTAGACAGATACTTACATACGGAGAGAGGEST: gi|125187333|gb|EL202287.1|EL202287
genomic: CAAAATCTGCAGTTCTGATGAATTTGGAATCTCGGgtatattttt ... cctgtgccagATGATTGCAGCAGAAGACATTGGTAGACAGATACTTACATACGGAGAGAGG
EST: GTGCCAAGGCAGCCACAAAATCTGCAGTTCTGATGAATTTGGAATCTCGG ATGATTGCAGCAGAAGACATTGGTAGACAGATACTTACA
genomic: GTGCCAAGGCAGCCACAAAATCTGCAGTTCTGATGAATTTGGAATCTCGGgtatattttt ... cctgtgccagATGATTGCAGCAGAAGACATTGGTAGACAGATACTTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAACCAGGCACATCTTGATCGTGCCAAGGCAGCCACAAAATCTGCAGTTCTGATGAATTTGGAATCTCGGgtatatttttaactctcgcaccctctacttacataaaaatacttaaatgttgccaatttgtttaacttgatccaaaccattatatgttatgaatgtgttcaaacggttttcctgtgccag
- - - - - - - - - - - - - - - - - - - - - CTGCAG