1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGCCTCAACCTCTCTTTCGTCGTCGACTCAGTTTCCGATTTAGGGTTACCCAATCTTCGCCATGTATCGCACGGCAGCTTCACGAGCCAGGGCTCTTAAGgtacatccttattcctttttacaattttacccttttatcctgttcctggaagattctggaacgatttggtccgattcagtgaattaacagatctggattc...
species | Arabidopsis thaliana |
transcript | AT1G51980.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAATCTTCGCAATGTATCGCAGGGCAGCTTCACGAGCCAGGGCTCTTAAG GGAGTTCTTACTCGTAGTTTGAGACCAGCGCGTTATGCTAGTTCTAGTGCTEST: gi|164091223|gb|EL994204.1|EL994204
genomic: CAATCTTCGCCATGTATCGCACGGCAGCTTCACGAGCCAGGGCTCTTAAGgtacatcctt ... tgttatatagGGAGTTCTTACTCGTAGTTTGAGACCAGCGCGTTATGCTAGTTCTAGTGCT
EST: CAATCTTCGCCATGTATCGCACGGCAGCTTCACGAGCCAGGGCTCTTAAG GGAGTTCTTACTCGTAGTTTGAGACCAGCGCGTTATGCEST: gi|152035137|gb|BP845856.2|BP845856
genomic: CAATCTTCGCCATGTATCGCACGGCAGCTTCACGAGCCAGGGCTCTTAAGgtacatcctt ... tgttatatagGGAGTTCTTACTCGTAGTTTGAGACCAGCGCGTTATGC
EST: CAATCTTCGCCATGTATCGCACGGAAGCTTCACGAGCCAGGGCTCTTAAG GGAGTTCTTACTCGTAGTTTGAGACCAGGGCGTTATGCTAGTTCTAGTGCT
genomic: CAATCTTCGCCATGTATCGCACGGCAGCTTCACGAGCCAGGGCTCTTAAGgtacatcctt ... tgttatatagGGAGTTCTTACTCGTAGTTTGAGACCAGCGCGTTATGCTAGTTCTAGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCTCAACCTCTCTTTCGTCGTCGACTCAGTTTCCGATTTAGGGTTACCCAATCTTCGCCATGTATCGCACGGCAGCTTCACGAGCCAGGGCTCTTAAGgtacatccttattcctttttacaattttacccttttatcctgttcctggaagattctggaacgatttggtccgattcagtgaattaacagatctggattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT