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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagatgaatgctttctgttcaaccttgggtttggtgatatatgctcagcttccttgtcttttttcttcctcctacagGTTTATCTGGGAACGTTCATTCAGCAGACATTGTTGCTATGTCCCAG

Basic information

species Arabidopsis thaliana
transcript AT1G01710.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829668|gb|CK119352.1|CK119352
EST:     AGATAACCGTTCCGAATTCCTCTTGAAACAGTATGATTACTTCGGCGTTG                         GTTTATCTGGGAACGTTCATTCAGCAGACATTGTTGCTATGTCCCAG
genomic: AGATAACCGTTCCGAATTCCTCTTGAAACAGTATGATTACTTCGGCGTTGgtgagagatg ... cctcctacagGTTTATCTGGGAACGTTCATTCAGCAGACATTGTTGCTATGTCCCAG
EST: gi|124877297|gb|EH956734.1|EH956734
EST:     AGATAACCGTTCCGAATTCCTCTTGAAACAGTATGATTACTTCGGCGTTG                         GTTTATCTGGGAACGTTCATTCAGCAG
genomic: AGATAACCGTTCCGAATTCCTCTTGAAACAGTATGATTACTTCGGCGTTGgtgagagatg ... cctcctacagGTTTATCTGGGAACGTTCATTCAGCAG
EST: gi|125028404|gb|EL100673.1|EL100673
EST:     GTATAACCGTTCCGAATTCCTCTTG-AACAGTATGATTACTTCGGCGTTG                         GTTTATCTGGGAACGTTCATTCAGCAG
genomic: G-ATAACCGTTCCGAATTCCTCTTGAAACAGTATGATTACTTCGGCGTTGgtgagagatg ... cctcctacagGTTTATCTGGGAACGTTCATTCAGCAG
EST: gi|19877354|gb|AU238185.1|AU238185
EST:     AGATAACCGTTCCGAATTCCTCTTGAAACAGTATGATTACTTCGGCGTTG                         GTTTATCTGGGAACGTTCATTCAGCAGACATTGTTGCTATGTCCCAG
genomic: AGATAACCGTTCCGAATTCCTCTTGAAACAGTATGATTACTTCGGCGTTGgtgagagatg ... cctcctacagGTTTATCTGGGAACGTTCATTCAGCAGACATTGTTGCTATGTCCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgggtttggtgatatatgctcagcttccttgtcttttttcttcctcctacagGTTTATCTGGGAACGTTCATTCAGCAGACATTGTTGCTATGTCCCAG
                 tatgctcagcttcctt  CT-rich tract
                                    ttttttctt  TA-rich tract