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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctttctctattcttttgaaccctattatacatacatatctggaaatgataagtgataaaagaattccttttggtatgtgtttttgaatatgagaacaacagCTGGTTGTATCATTAACGCAAGAGGCCCTATTAAGAGAGGCTAGACCTCCAAAACCCTCCGGCACGTCGAAGCTCTGAATGGCTCTCAACGTAAGTTAAA

Basic information

species Arabidopsis thaliana
transcript AT1G01710.1
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125204553|gb|EL219507.1|EL219507
EST:     CAGGAAAGGAGAG                         CTGGTTGTATCATTAACGCAAGAGGCCCTATTAAGAGAGGCTAGACCTCCA
genomic: CAGGAAAGGAGAGgtactctttc ... agaacaacagCTGGTTGTATCATTAACGCAAGAGGCCCTATTAAGAGAGGCTAGACCTCCA
EST: gi|19797542|gb|AU229328.1|AU229328
EST:     ATGAGACCCCTGGTTTTGTGACTGGTCAAATGTTCAACAGGAAAGGAGAGG                         CTGGTTGTATCATTAACGCAAGAGGCCCTATTAAGAGAGGCTAGACCTCC
genomic: ATGAGACCCGTGGTTTTGTGACTGGTCAAATGTTCAACAGGAAAGGAGA-Ggtactctttc ... agaacaacagCTGGTTGTATCATTAACGCAAGAGGCCCTATTAAGAGAGGCTAGACCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gataagtgataaaagaattccttttggtatgtgtttttgaatatgagaacaacagCTGGTTGTATCATTAACGCAAGAGGCCCTATTAAGAGAGGCTAGACCTCCAAAACCCTCCGGCACGTCGAAGCTCTGAATGGCTCTCAACGTAAGTTAAA
        ataaaagaatt  TA-rich tract