1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GGAAAGGGGATTATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGgtttgtttctgagactagatatcgatgtatctatcttcgccattgttataatttgattcttgtttgcag
species | Arabidopsis thaliana |
transcript | AT1G01710.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAG GCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTGEST: gi|164181479|gb|ES009569.1|ES009569
genomic: TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGgtttgtttct ... ttgtttgcagGCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTG
EST: TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAG GCTCAGGTTTCCGGEST: gi|86066782|gb|DR362539.1|DR362539
genomic: TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGgtttgtttct ... ttgtttgcagGCTCAGGTTTCCGG
EST: TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAG GCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTNCGAATTCCTCTTGEST: gi|19877354|gb|AU238185.1|AU238185
genomic: TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGgtttgtttct ... ttgtttgcagGCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTG
EST: TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAG GCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTG
genomic: TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGgtttgtttct ... ttgtttgcagGCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAGGGGATTATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGgtttgtttctgagactagatatcgatgtatctatcttcgccattgttataatttgattcttgtttgcag
- - - - - - - - - - - TGAAGA
- - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA