1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TTGTCGAGTTCCTTGGAAACGTCCCTTTACTCCAGAAATTACCGAGCTCTTCTCTGAAGAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACGgtcggtccattctcaatttcggatttattcttctctctgatttcacgatataaaaaaattgagctgtgttgttctctattgtattattgaag
species | Arabidopsis thaliana |
transcript | AT1G01710.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGCTCTTCTCTGAAGAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACG GGAAAGGGGATTATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATTEST: gi|164181479|gb|ES009569.1|ES009569
genomic: GAGCTCTTCTCTGAAGAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACGgtcggtccat ... attattgaagGGAAAGGGGATTATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATT
EST: TTGCTCAAGTTGTTGTGCCGAAACGTTACG GGAAAGGGGATTATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATTEST: gi|86066782|gb|DR362539.1|DR362539
genomic: TTGCTCAAGTTGTTGTGCCGAAACGTTACGgtcggtccat ... attattgaagGGAAAGGGGATTATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATT
EST: GAGCTCTTCTCTGAAGAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACG GGAAAGGGGATTATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATTEST: gi|19877354|gb|AU238185.1|AU238185
genomic: GAGCTCTTCTCTGAAGAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACGgtcggtccat ... attattgaagGGAAAGGGGATTATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATT
EST: GAGCTCTTCTCTGAAGAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACG GGAAAGGGGATTATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATT
genomic: GAGCTCTTCTCTGAAGAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACGgtcggtccat ... attattgaagGGAAAGGGGATTATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTCGAGTTCCTTGGAAACGTCCCTTTACTCCAGAAATTACCGAGCTCTTCTCTGAAGAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACGgtcggtccattctcaatttcggatttattcttctctctgatttcacgatataaaaaaattgagctgtgttgttctctattgtattattgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA