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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttttattttctcttggtgatgtatgagttttgtgtgtctgggttaaattttttaattacattgaggcattattccagtagggatcttccagataagtaactattacgagttactattcctcatttggtttgcagGATGTGGTTTCACCGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTG

Basic information

species Arabidopsis thaliana
transcript AT1G01710.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164192453|gb|ES031749.1|ES031749
EST:     CCTGGACCATGC                         GATGTGGTTTCACCGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTG
genomic: CCTGGACCATGCgtaggttttt ... tggtttgcagGATGTGGTTTCACCGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTG
EST: gi|164056936|gb|ES099954.1|ES099954
EST:     CCTGGACCATGC                         GATGTGGTTTCACCGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTG
genomic: CCTGGACCATGCgtaggttttt ... tggtttgcagGATGTGGTTTCACCGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTG
EST: gi|19797542|gb|AU229328.1|AU229328
EST:     AAAGGGGTGAAATCCGCCGCACTTAGCCTGGACCATGC                         GATGT-GTTTCACCGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTG
genomic: AAAGGGGTGAAATCCGCCGCACTTAGCCTGGACCATGCgtaggttttt ... tggtttgcagGATGTGGTTTCACCGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggatcttccagataagtaactattacgagttactattcctcatttggtttgcagGATGTGGTTTCACCGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTG
              aagtaac  putative branch site (score: 2)
                                    ttcctcattt  putative PPT
            ataagtaactatta  TA-rich tract