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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttctgagactagatatcgatgtatctatcttcgccattgttataatttgattcttgtttgcagGCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTGAAACAGTATGATTACTTCGGCGTTG

Basic information

species Arabidopsis thaliana
transcript AT1G01710.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829668|gb|CK119352.1|CK119352
EST:     TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAG                         GCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTG
genomic: TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGgtttgtttct ... ttgtttgcagGCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTG
EST: gi|164181479|gb|ES009569.1|ES009569
EST:     TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAG                         GCTCAGGTTTCCGG
genomic: TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGgtttgtttct ... ttgtttgcagGCTCAGGTTTCCGG
EST: gi|86066782|gb|DR362539.1|DR362539
EST:     TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAG                         GCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTNCGAATTCCTCTTG
genomic: TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGgtttgtttct ... ttgtttgcagGCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTG
EST: gi|19877354|gb|AU238185.1|AU238185
EST:     TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAG                         GCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTG
genomic: TTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGgtttgtttct ... ttgtttgcagGCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagatatcgatgtatctatcttcgccattgttataatttgattcttgtttgcagGCTCAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTGAAACAGTATGATTACTTCGGCGTTG
                                    atttgat  putative branch site (score: 5)
                                          ttcttgttt  CT-rich tract
                           attgttataatttgat  TA-rich tract