1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAAGCATCCCAACTGGAGCATGGGCCGCAAAATTACGGTTGATTCTGCCACGCTCATGAACAAGgtaagctttttctgagttgcgcttgcaaagctggcaacaattcatttcactcgatgttttctcaaattttgtttttgcaaccaagtcctgctggtatctattttatggatgtcgcttcaattgaaatagttggtggatcttctttggagcatgcatgcttccttgtgcttagaaatgacgtcaaatgtgttgcttgtcag
species | Physcomitrella patens |
transcript | PP1S62_157V6.4 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTGCCACGCTCATGAACAAG GGGTTGGAAGTGATTGAAGCTCACTATCTCTTCGGTGCTGATTACGATGACEST: gi|162185513|gb|FC361237.1|FC361237
genomic: CTGCCACGCTCATGAACAAGgtaagctttt ... tgcttgtcagGGGTTGGAAGTGATTGAAGCTCACTATCTCTTCGGTGCTGATTACGATGAC
EST: GGAGCATGGGCCGCAAAATTACGGTTGATTCTGCCACGCTCATGAACAAG GGGTTGGAAGTGATTGAAGCTCACTATCTCTTCGGTGCTGATTACGATGACEST: gi|100442899|gb|BY963394.1|BY963394
genomic: GGAGCATGGGCCGCAAAATTACGGTTGATTCTGCCACGCTCATGAACAAGgtaagctttt ... tgcttgtcagGGGTTGGAAGTGATTGAAGCTCACTATCTCTTCGGTGCTGATTACGATGAC
EST: GGAGCATGGGCCGCAAAATTACGGTTGATTCTGCCACGCTCATGAACAAG GGGTTGGAAGTGEST: gi|162163958|gb|FC339868.1|FC339868
genomic: GGAGCATGGGCCGCAAAATTACGGTTGATTCTGCCACGCTCATGAACAAGgtaagctttt ... tgcttgtcagGGGTTGGAAGTG
EST: GGAGCATGGGCCGCAAAATTACGGTTGATTCTGCCACGCTCATGAACAAG GGGTTGGAAGTGATTGAAGCTCACTATCTCTTCGGTGCTGATTACGATGAC
genomic: GGAGCATGGGCCGCAAAATTACGGTTGATTCTGCCACGCTCATGAACAAGgtaagctttt ... tgcttgtcagGGGTTGGAAGTGATTGAAGCTCACTATCTCTTCGGTGCTGATTACGATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAAGTTGAAGGAGGTTAAAGTAGCAGATGCTTTGAAGCATCCCAACTGGAGCATGGGCCGCAAAATTACGGTTGATTCTGCCACGCTCATGAACAAGgtaagctttttctgagttgcgcttgcaaagctggcaacaattcatttcactcgatgttttctcaaattttgtttttgcaaccaagtcctgctggtatctattttatggatgtcgcttcaattgaaatagttggtggatcttctttggagcatgcatgcttccttgtgcttagaaatgacgtcaaatgtgttgcttgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA