Sequence
atgc intronic sequence ATGC exonic sequenceTTTCTCCGATCAGCGCCGATGCGGTGGAAGCTTAAGTCGTCGGCGTACAAGCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAGgtccgtgcacggttttttctctttttttttccctgcgatttttttttgggtggtgagattttgaggttttttttttctgtgctcggtggcggtttctgcag
Basic information
species | Oryza sativa |
transcript | LOC_Os02g17500.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g17500.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G412899_T05 (Zea mays), 5'ss of exon 2
TTTCTCCGATCAGCGCCGATGCGGTGGAAGCTTAAGTCGTCGGCGTACAAGCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAGgtccgtgcacggttttttctct--ttttttttccctgcgatttttttttgggtggtgagattttgaggttttttttttctgtgctcggtggcggtttctgcag
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-------------CGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAgttcgtgccgcatgtttcccccggttcctcttaccaccggttaattt----atggtgagatttgaa----tctcatttcattttcccatttccatgtctgcag
upper sequence: LOC_Os02g17500.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G412899_T03 (Zea mays), 5'ss of exon 1
TTTCTCCGATCAGCGCCGATGCGGTGGAAGCTTAAGTCGTCGGCGTACAAGCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAGgtccgtgcacggttttttctct--ttttttttccctgcgatttttttttgggtggtgagattttgaggttttttttttctgtgctcggtggcggtttctgcag
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TCTGTGGAATCAGCGGCGATGCGGTGGAAGCTTAACTCCTCCGTCTACAAGCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAgttcgtgccgcatgtttcccccggttcctcttaccaccggttaattt----atggtgagatttgaa----tctcatttcattttcccatttccatgtctgcag
upper sequence: LOC_Os02g17500.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G412899_T04 (Zea mays), 5'ss of exon 2
TTTCTCCGATCAGCGCCGATGCGGTGGAAGCTTAAGTCGTCGGCGTACAAGCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAGgtccgtgcacggttttttctct--ttttttttccctgcgatttttttttgg-gtggtgagattttgaggttttttttttctgtgctcggtggcggtttctgcag----------------------------------------------
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--------------------------------------------------GCGCGTGCCGTCCAGGGAAACCGCCATGGAACCCGACGTCGAGACGCCAAGTTCGTGCCGCATGTTTCCCCCGGTTCCTCTTACCACCGGTTAATTTATGgtgagatttgaatctcatttcattttcccatttccatgtctgcagtgagaatgacggacggcggcggcagcggcgcggggccgtcgtggcgcatgtcgttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|66920526|gb|CX107374.1|CX107374EST: GCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAG CGAAAATGGCGGACGGCGGGGCCCCGTCGTGGCGCATGTCGCTGCCGCACG
genomic: GCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAGgtccgtgcac ... gtttctgcagCGAAAATGGCGGACGGCGGGGCCCCGTCGTGGCGCATGTCGCTGCCGCACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCTCCGATCAGCGCCGATGCGGTGGAAGCTTAAGTCGTCGGCGTACAAGCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAGgtccgtgcacggttttttctctttttttttccctgcgatttttttttgggtggtgagattttgaggttttttttttctgtgctcggtggcggtttctgcag
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