1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaacaacattcacatacctcacaagattgagtttgcatgattgtcattgatttctgcaattctacgtattctctttgccactatgttgaacttctacacttttactttgcag
species | Glycine max |
transcript | GLYMA19G36080.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|207699258|gb|GD680320.1|GD680320
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: AAGAGCTGATCCAAAGGAAATCGTTGATTCTTT-CAAGAAACGTTTTT-G GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|254332641|gb|GR844011.1|GR844011
genomic: AAGAGCTGATCCAAAGGAAATCGTTGAT-CTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|192312967|gb|FK003633.1|FK003633
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|214008144|gb|DB987049.1|DB987049
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|17021919|gb|BM092953.1|BM092953
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|208330925|gb|GE128096.1|GE128096
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: AAATCGTTGATC-TTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|12689917|gb|BG156253.1|BG156253
genomic: AAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|151412174|gb|EV281986.1|EV281986
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|254313549|gb|GR831178.1|GR831178
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CA-GAGCTGATCCAAAGGAA-TCGTTGATCTTTTCA-GAA-CGTTTTTTG -CTCA-CAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAEST: gi|192318324|gb|FK011008.1|FK011008
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTA
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|192326240|gb|FK015832.1|FK015832
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAACTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|193681564|gb|FK623314.1|FK623314
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|214005741|gb|DB990139.1|DB990139
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|208338492|gb|GE135678.1|GE135678
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: AAATCGTTGATCTTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|37995424|gb|CF807013.1|CF807013
genomic: AAATCGTTGATC-TTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|209701115|gb|BW652643.1|BW652643
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|254332640|gb|GR844010.1|GR844010
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|192318325|gb|FK011009.1|FK011009
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|151406211|gb|EV276026.1|EV276026
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAA-TTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|58024173|gb|CX710914.1|CX710914
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|213602694|gb|DB978109.1|DB978109
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTGEST: gi|10254921|gb|BE822687.1|BE822687
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaacaacattcacatacctcacaagattgagtttgcatgattgtcattgatttctgcaattctacgtattctctttgccactatgttgaacttctacacttttactttgcag
- - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA