Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGAATGGGCTGCGGGTCTAGTGTGCCTGTGGAAGCGGTGGACCAGGGTGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaagcagcggagtctgttgcggcccccacagctaagacgcatgttgatggcgcccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09786
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14239380|gb|BG858196.1|BG858196
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|16073072|gb|BI875068.1|BI875068
EST:     GACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: GACCAGCAGAAGCAGCAACAACAGCAGGGCGGAG-CGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|14237582|gb|BG856398.1|BG856398
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGNACCGACGCTGAGACACAAAAGGCAAAG
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCG-ACCGACGCTGAGACACAAAAGGCAAAG
EST: gi|14232081|gb|BG850897.1|BG850897
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|8513690|gb|BE121585.1|BE121585
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|15701797|gb|BI726102.1|BI726102
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|8286628|gb|BE024187.1|BE024187
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|6552006|gb|AV397790.1|AV397790
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|23365396|gb|BU653216.1|BU653216
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|49470919|gb|BP098780.1|BP098780
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|15695046|gb|BI719223.1|BI719223
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
EST: gi|8514321|gb|BE122216.1|BE122216
EST:     TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATG                         GCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA
genomic: TGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaag ... gcgcccgcagGCTCGGCTGCCGACAAGGCCGCGACCGACGCTGAGACACAAAAGGCAAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACGAATGGGCTGCGGGTCTAGTGTGCCTGTGGAAGCGGTGGACCAGGGTGACCAGCAGAAGCAGCAACAACAGCAGGGCGGAGCGGCTGCCAAGAATGgtgcgttaagcagcggagtctgttgcggcccccacagctaagacgcatgttgatggcgcccgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC