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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgtttgattcaaagttgactattgatcttgtcatctgctaactttctgagctttgtctgacatttattttgttgcatcggatatagctttcagattgtaacagttgcttttaaatatttataatttgagatgtgtttgatttgttacactttcagCCAATACGATCACCAGTTGCACCAGGTGTGCTCATCACTGGTATCGTGCCTTCAGAATCATCAATATTCAAGAGTGCTCTGCATCCTTTACGCCTGACTT

Basic information

species Vitis vinifera
transcript Vv01s0127g00430.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 11
gtatttgtttgattcaaagttgact----attgatcttgtcatctgctaactttctgagctttgtctgacatttattttgttgca-tcggatatagctttcagat---tgtaacagttgcttttaaatatttataatttgagatgtgtt--tgatttgttacactttcagCCAATACGATCACCAGTTGCACCAGGTGTGCTCATCACTGGTATCGTGCCTTCAGAATCATCAATATTCAAGAGTGCTCTGCATCCTTTACGCCTGACTT
||||   | | |    ||| ||  |     || ||  |    | || | ||| | | |  ||  |     ||  || |||  | |      |||  |   ||  |   | || ||  | |||  ||   | |  || |  |    | ||  || | |||| |||||  ||||||||||||||||  | ||||||||||| ||||| ||||| || || |||||||| ||||||||||| || |||||  |||||||||| ||||| ||||
gtatcaatctcacatgaagctgtattgtagtttattgttctttttgtttactcttttactttaattaatgatgcatcttgaagaaactatttatttccaacaattatatctagcaaattcttagaaggttcttcaactgtatgcttattgttgctatgtttcacttgtagCCAATACGATCACCTTTGGCACCAGGTGTCCTCATTACTGGAATTGTACCTTCAGAGTCATCAATATTTAAAAGTGCATTGCATCCTTTGCGCCTTACTT

upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA04G10090.1 (Glycine max), 3'ss of exon 11
gtatttgtttgattcaaagttgactattgatcttgtcatctgctaactttctgagctttgtctgacatttat-tttgttgcatcggatatagctttcagat-------tgtaacagttgcttttaaatatttataatttgagatgtgtt--tgatttgttacactttcagCCAATACGATCACCAGTTGCACCAGGTGTGCTCATCACTGGTATCGTGCCTTCAGAATCATCAATATTCAAGAGTGCTCTGCATCCTTTACGCCTGACTT
|||  | | | |    ||| ||  |  |  | |  |  | |  |   || ||   |  | |  |  | | ||   | ||| |     |||   ||||  ||       | || ||  | |||  ||   | |  || |  |  | | ||  || ||| || |||||  ||||||||||||||||  | ||||||||||| |||||  |||| || || |||||||| ||||||||||| || |||||  |||||||||| |||||  |||
gtaaatatctcacatgaagctgtatcgtagtttattattttcatcttttactttacccttttagttaatgatgcatcttgaagaaactatttatttccaataattatatctagcaaattcttagaaggttcttcaactgtatgtttattgttgctttatttcacttgtagCCAATACGATCACCTTTGGCACCAGGTGTCCTCATTGCTGGAATTGTACCTTCAGAGTCATCAATATTTAAAAGTGCATTGCATCCTTTGCGCCTTTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttgcttttaaatatttataatttgagatgtgtttgatttgttacactttcagCCAATACGATCACCAGTTGCACCAGGTGTGCTCATCACTGGTATCGTGCCTTCAGAATCATCAATATTCAAGAGTGCTCTGCATCCTTTACGCCTGACTT
                                 gtttgat  putative branch site (score: 5)
                                              cactttc  putative PPT
       ttttaaatatttataa  TA-rich tract